Hg_chrom1_TN10mRNA_1724
Organism: Heterodera glycines Gene Locus: chr1:15231325-15234695 Feature type: polypeptideProtein Sequence
Length: 599
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.815 | 1.457 | 0.518 | 1.308 | 0.856 | 0.855 | 2.003 | 0.705 | 0.993 | 0.455 | 1.866 | 1.53 | 1.188 | 1.567 | 1.026 | 0.903 | 0.708 | 1.284 | 0.786 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1655
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.974
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RRRR
|
— | — |
58-82
|
0.999
|
— | — |
0.000
|
— | — |
0.690
|
0.217
|
0.004
|
0.608
|
0.149
|
0.134
|
0.126
|
0.063
|
0.109
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006313
|
1.000
|
1.000
|
Hsc_gene_12765.t1
|
Hsc_gene_12765.t1
|
— |
Q6AYI2.1 Kelch domain-containing protein 3 [Rattus norvegicus]
|
KAI1723517.1 kelch motif domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.870|GO:0005575_0.793|GO:0110165_0.782|GO:0005622_0.718|GO:0009987_0.608|GO:0003674_0.599|GO:0008152_0.534|GO:0005737_0.526|GO:0043226_0.520|GO:0065007_0.519|GO:0005488_0.513|GO:0016020_0.507|GO:0050789_0.504
|
IPR015915+2-83_11-67_259-416_278-544_417-567+|IPR052637+1-573+
|
— |
PF13415+300-346_348-398_462-505+Galactose_oxidase,_central_domain
|
— |
PTHR46461+1-573+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
78-280;592-599
|
2.000
|
1-77;281-591
|
9d1z_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
68049.690
|
5.056
|
-19.000
|
30.551
|
13.856
|
50.083
|
49.917
|
14.691
|
15.860
|
50.584
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2684.921
|
3985.492
|
2083.616
|
1141.114
|
2021.259
|
2987.597
|
3123.058
|
4409.981
|
2751.555
|
2275.817
|
2479.705
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.165
|
-1.941
|
-0.760
|
0.794
|
0.579
|
— | — | — | — |
-1.104
|
— | — | — |
No JSON data available for plots.