Hg_chrom1_TN10mRNA_1725
Organism: Heterodera glycines Gene Locus: chr1:15234791-15237813 Feature type: polypeptideProtein Sequence
Length: 541
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.032 | 0.946 | 0.84 | 0.446 | 0.493 | 1.185 | 0.572 | 1.017 | 1.191 | 1.374 | 0.448 | 0.979 | 1.335 | 1.422 | 1.66 | 1.69 | 0.818 | 0.896 | 1.422 | 0.489 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1656
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.754
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
extracellular|golgi_apparatus
|
— |
RRPLSRAALWCRPRRRCF
|
38-60
|
0.994
|
24-47
|
0.998
|
— | — |
0.000
|
— | — |
0.099
|
0.037
|
0.042
|
0.203
|
0.409
|
0.248
|
0.708
|
0.021
|
0.195
|
0.632
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006314
|
1.000
|
1.000
|
Hsc_gene_12766.t1
|
Hsc_gene_12766.t1
|
— | — |
KAI1708503.1 protein HtrL [Ditylenchus destructor]
|
No
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR011735+281-541+|IPR053291+304-539+
|
— |
PF09612+281-541+Bacterial_protein_of_unknown_function_(HtrL_YibB)
|
— |
PTHR21579+304-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32;95-139
|
2.000
|
33-94;140-541
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.936
|
59926.500
|
10.415
|
24.500
|
20.702
|
10.351
|
46.211
|
53.789
|
13.124
|
7.579
|
53.789
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
372.830
|
173.039
|
596.887
|
359.773
|
118.735
|
395.777
|
359.446
|
950.918
|
77.133
|
465.315
|
298.951
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.555
|
0.919
|
-0.620
|
-1.631
|
1.751
|
— |
1.162
|
-1.264
|
— | — | — | — | — |
No JSON data available for plots.