Hg_chrom1_TN10mRNA_1730
Organism: Heterodera glycines Gene Locus: chr1:15254974-15255949 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.744 | 0.545 | 0.862 | 0.417 | 2.051 | 0.536 | 2.0 | 0.889 | 1.014 | 1.136 | 0.588 | 0.972 | 2.019 | 0.918 | 1.214 | 0.574 | 0.833 | 0.385 | 1.618 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1661
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.881
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.572
|
0.155
|
0.083
|
0.525
|
0.099
|
0.095
|
0.037
|
0.040
|
0.092
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006318
|
1.000
|
1.000
|
Hsc_gene_12771.t1
|
Hsc_gene_12771.t1
|
— |
P47976.2 mRNA decay factor CTH1 [Saccharomyces cerevisiae S288C]
|
KAF7624656.1 C3H1-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0046872
|
GO:0008150_0.885|GO:0065007_0.800|GO:0050789_0.795|GO:0009987_0.787|GO:0050794_0.787|GO:0005575_0.770|GO:0110165_0.770|GO:0005622_0.738|GO:0008152_0.713|GO:0043170_0.711|GO:0009058_0.699|GO:0009059_0.699|GO:0010467_0.699|GO:0019222_0.699|GO:0031323_0.699|GO:0044237_0.699|GO:0044249_0.699|GO:0044238_0.696|GO:0060255_0.692|GO:0009889_0.673|GO:0031326_0.673|GO:0010468_0.669|GO:0010556_0.669|GO:0003674_0.665|GO:0005488_0.640|GO:0006139_0.637|GO:0080090_0.636|GO:0016070_0.630|GO:0090304_0.630|GO:0005737_0.590|GO:0043226_0.590|GO:0048519_0.582|GO:0043229_0.577|GO:0048523_0.575|GO:0016020_0.550|GO:0097159_0.546|GO:0003676_0.545|GO:0009892_0.532|GO:0010605_0.529|GO:0031324_0.527|GO:0009890_0.521|GO:0031327_0.521|GO:0010558_0.519|GO:0043227_0.517|GO:0043231_0.511|GO:0019219_0.509|GO:0051252_0.508
|
IPR000571+122-149_122-150_123-149+|IPR036855+121-153+|IPR045877+44-158+
|
SM00356+122-149+
|
PF00642+123-149+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)
|
G3DSA:4.10.1000.10:FF:000001+118-155+zinc_finger_CCCH_domain-containing_protein_15-like
|
PTHR12547+44-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-117
|
1.000
|
118-200
|
1m9o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
22617.720
|
10.019
|
17.000
|
21.500
|
13.500
|
49.000
|
51.000
|
16.000
|
5.500
|
51.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
346.391
|
69.162
|
124.553
|
114.354
|
282.942
|
568.346
|
647.691
|
723.396
|
6.995
|
561.297
|
323.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
0.588
|
— |
1.276
|
1.021
|
— | — | — |
-5.401
|
4.236
|
— | — | — |
No JSON data available for plots.