Hg_chrom1_TN10mRNA_1731
Organism: Heterodera glycines Gene Locus: chr1:15256618-15258031 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 0.978 | 0.983 | 0.207 | 3.904 | 0.847 | 0.393 | 0.751 | 0.467 | 1.015 | 2.503 | 1.413 | 0.334 | 0.0 | 2.145 | 0.858 | 0.443 | 0.273 | 1.386 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1662
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKREEGKKREGKRKHS,KKRRQLEQKQKMEEEERKMREEEERKKWEEEERKKREEEERKKWEEEERKKSEEEERKKWEEEERKKREEEERKKSEEEERKKWEEEERKKREEEKRKKREEEERKKREEEKRKKREEEKRKKKEEEERKKCEEKERKKREEGKKREGKRKH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.962
|
0.044
|
0.003
|
0.299
|
0.027
|
0.016
|
0.030
|
0.109
|
0.065
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006319
|
1.000
|
1.000
|
Hsc_gene_12772.t1
|
Hsc_gene_12772.t1
|
— | — |
KAI3409768.1 hypothetical protein GPALN_006144 [Globodera pallida]
|
HEP3490507
|
0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-160;268-333
|
2.000
|
1-83;161-267
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
40452.920
|
5.782
|
-3.500
|
57.357
|
5.405
|
73.574
|
26.426
|
28.529
|
28.829
|
28.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
299.628
|
39.067
|
136.219
|
256.721
|
730.372
|
448.774
|
944.602
|
117.916
|
2.924
|
306.053
|
176.141
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.566
|
2.581
|
1.029
|
1.477
|
-0.689
|
1.085
|
-2.037
|
3.147
|
-6.821
|
6.681
|
— | — | — |
No JSON data available for plots.