Hg_chrom1_TN10mRNA_174
Organism: Heterodera glycines Gene Locus: chr1:1229221-1231668 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.157 | 0.852 | 0.762 | 0.361 | 1.134 | 1.074 | 0.997 | 1.571 | 1.047 | 1.203 | 0.555 | 3.388 | 1.6 | 0.604 | 2.351 | 0.524 | 0.343 | 0.714 | 2.014 | 0.616 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_169
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.308
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — |
29-49
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.522
|
0.197
|
0.137
|
0.365
|
0.050
|
0.069
|
0.132
|
0.015
|
0.118
|
0.392
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001034
|
4.000
|
1.000
|
Hsc_gene_20540.t1
|
— | — | — |
WP_135759825.1 Fic family protein [Leptospira idonii];TGN19822.1 Fic family protein [Leptospira idonii]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0003674_0.875|GO:0005575_0.858|GO:0110165_0.841|GO:0003824_0.795|GO:0050896_0.759|GO:0016020_0.757|GO:0006950_0.708|GO:0016740_0.699|GO:0071944_0.672|GO:0005886_0.665|GO:0016772_0.659|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0009987_0.623|GO:0005622_0.592|GO:0005737_0.587|GO:0008152_0.586|GO:0044238_0.551|GO:0043226_0.541|GO:0005488_0.540|GO:0043229_0.520|GO:0043170_0.507|GO:0043227_0.507|GO:0051716_0.505|GO:0043231_0.502|GO:0005515_0.501
|
IPR003812+67-191_122-156+|IPR036597+6-190_77-185+|IPR040198+122-183+
|
— |
PF02661+122-156+Fic/DOC_family
|
— |
PTHR13504+122-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-191
|
6i7l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
22143.630
|
10.434
|
11.000
|
29.319
|
13.613
|
42.932
|
57.068
|
18.325
|
10.995
|
40.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
7.318
|
2.314
|
8.849
|
6.614
|
6.009
|
12.205
|
16.614
|
7.053
|
2.410
|
7.835
|
5.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.712
|
1.383
|
— | — |
1.036
|
— | — |
1.378
|
— | — | — | — | — |
No JSON data available for plots.