Hg_chrom1_TN10mRNA_1740
Organism: Heterodera glycines Gene Locus: chr1:15280613-15282766 Feature type: polypeptideProtein Sequence
Length: 288
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.171 | 1.05 | 0.442 | 1.557 | 1.157 | 2.137 | 0.579 | 1.91 | 0.694 | 1.267 | 0.368 | 0.408 | 1.447 | 1.736 | 1.559 | 1.141 | 0.683 | 0.631 | 0.0 | 0.204 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1670
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
chloroplast
|
RRTRFCPMLHRRKSG
|
— | — |
40-119
|
0.928
|
1-27
|
0.942
|
0.999
|
1.000
|
1.000
|
0.239
|
0.032
|
0.045
|
0.216
|
0.245
|
0.676
|
0.356
|
0.049
|
0.555
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006326
|
1.000
|
1.000
|
Hsc_gene_12780.t1
|
Hsc_gene_12780.t1
|
— | — |
KAI6176025.1 Protein R05C11.4 [Aphelenchoides bicaudatus]
|
No
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-288
|
1.000
|
1-168
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.846
|
31807.950
|
7.745
|
7.500
|
23.264
|
9.722
|
48.264
|
51.736
|
13.889
|
9.375
|
51.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
641.228
|
1087.981
|
728.597
|
434.115
|
275.925
|
500.384
|
726.687
|
1150.339
|
527.404
|
570.810
|
552.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.808
|
-1.463
|
-0.638
|
-0.686
|
0.874
|
0.548
|
1.101
|
-0.522
|
— | — | — | — | — |