Hg_chrom1_TN10mRNA_1741
Organism: Heterodera glycines Gene Locus: chr1:15285719-15287837 Feature type: polypeptideProtein Sequence
Length: 534
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.827 | 1.002 | 1.634 | 0.323 | 3.371 | 1.2 | 0.803 | 0.843 | 0.375 | 0.886 | 1.22 | 0.771 | 0.728 | 0.576 | 1.452 | 0.936 | 0.46 | 0.511 | 0.576 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1671
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RAKKRTR,NRRAKKR,RKFGAAIQLSERKKNE,KRLQMIKWRAEQEERNRRA,KKRTRQDDDEEGTNGRRRD,KRTRQDDDEEGTNGRRRDA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.889
|
0.100
|
0.023
|
0.208
|
0.026
|
0.020
|
0.051
|
0.037
|
0.026
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006327
|
1.000
|
1.000
|
Hsc_gene_12782.t1
|
— | — |
Q9DF50.2 Claspin [Xenopus laevis]
|
KAI1704879.1 claspin [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.946|GO:0008150_0.946|GO:0110165_0.942|GO:0005622_0.921|GO:0009987_0.909|GO:0065007_0.874|GO:0043226_0.859|GO:0050789_0.856|GO:0003674_0.850|GO:0005488_0.850|GO:0016020_0.849|GO:0071840_0.844|GO:0050794_0.839|GO:0016043_0.834|GO:0043229_0.830|GO:0005737_0.799|GO:0050896_0.790|GO:0043227_0.785|GO:0006996_0.780|GO:0008152_0.772|GO:0043170_0.772|GO:0051716_0.771|GO:0071944_0.766|GO:0048518_0.765|GO:0005886_0.762|GO:0019222_0.760|GO:0048519_0.755|GO:0031323_0.752|GO:0044237_0.752|GO:0044238_0.751|GO:0048522_0.750|GO:0060255_0.747|GO:0080090_0.743|GO:0048523_0.742|GO:0019538_0.738|GO:0006950_0.734|GO:0007154_0.730|GO:0009893_0.725|GO:0023052_0.725|GO:0043231_0.725|GO:0010604_0.717|GO:0005634_0.715|GO:0031325_0.714|GO:0007049_0.712|GO:0022402_0.712|GO:0007165_0.711|GO:0097159_0.710|GO:0033554_0.708|GO:0000280_0.704|GO:0048285_0.704|GO:0036211_0.701|GO:0043412_0.701|GO:0000278_0.698|GO:0051246_0.698|GO:0140014_0.698|GO:1903047_0.698|GO:0035556_0.697|GO:0003676_0.693|GO:0006974_0.691|GO:0051726_0.690|GO:0065009_0.690|GO:0003824_0.688|GO:0006793_0.687|GO:0006796_0.687|GO:0010564_0.686|GO:0140096_0.686|GO:0050790_0.682|GO:0044093_0.680|GO:0044848_0.680|GO:0006468_0.679|GO:0016310_0.679|GO:0022403_0.679|GO:0007346_0.678|GO:0031399_0.678|GO:0044770_0.678|GO:0051247_0.678|GO:0010948_0.677|GO:0019220_0.677|GO:0044772_0.677|GO:0045786_0.677|GO:0051174_0.677|GO:0000075_0.676|GO:0018193_0.676|GO:0042325_0.676|GO:1901987_0.676|GO:1901988_0.676|GO:0001932_0.675|GO:0007093_0.675|GO:0043085_0.675|GO:0044839_0.675|GO:0044877_0.675|GO:0045930_0.675|GO:1901990_0.675|GO:0000077_0.674|GO:0000086_0.674|GO:0004672_0.674|GO:0010562_0.674|GO:0016301_0.674|GO:0016740_0.674|GO:0016772_0.674|GO:0016773_0.674|GO:0031570_0.674|GO:0042770_0.674|GO:0043549_0.674|GO:0045859_0.674|GO:0051338_0.674|GO:1901991_0.674|GO:0031401_0.673|GO:0000076_0.670|GO:0000085_0.670|GO:0001934_0.670|GO:0007095_0.670|GO:0010389_0.670|GO:0010972_0.670|GO:0018105_0.670|GO:0018209_0.670|GO:0032147_0.670|GO:0033314_0.670|GO:0033674_0.670|GO:0042327_0.670|GO:0044773_0.670|GO:0044774_0.670|GO:0044818_0.670|GO:0045860_0.670|GO:0045937_0.670|GO:0051319_0.670|GO:0051325_0.670|GO:0051329_0.670|GO:0051347_0.670|GO:0098763_0.670|GO:1902749_0.670|GO:1902750_0.670|GO:0003677_0.667|GO:0031974_0.656|GO:0031981_0.656|GO:0043233_0.656|GO:0070013_0.656|GO:0000217_0.650|GO:0010997_0.650|GO:0005654_0.626|GO:0005773_0.607|GO:0012505_0.607|GO:0005794_0.553
|
IPR024146+198-441+
|
— | — | — |
PTHR14396+198-441+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-534
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
61176.500
|
4.177
|
-70.500
|
46.067
|
6.554
|
64.419
|
35.581
|
16.854
|
29.213
|
43.820
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
780.924
|
146.085
|
348.289
|
743.232
|
1422.432
|
915.977
|
2165.431
|
231.719
|
224.787
|
1008.016
|
672.346
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.021
|
2.210
|
1.204
|
0.905
|
-0.621
|
1.253
|
-2.095
|
3.370
|
— | — | — | — | — |
No JSON data available for plots.