Hg_chrom1_TN10mRNA_1743
Organism: Heterodera glycines Gene Locus: chr1:15288860-15290352 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.061 | 1.244 | 0.131 | 0.824 | 1.852 | 1.63 | 1.331 | 0.676 | 1.285 | 0.864 | 0.895 | 0.951 | 0.512 | 1.63 | 0.706 | 0.81 | 0.864 | 1.17 | 0.559 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1673
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.847
|
0.232
|
0.010
|
0.523
|
0.121
|
0.022
|
0.069
|
0.003
|
0.073
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006328
|
1.000
|
1.000
|
Hsc_gene_12784.t1
|
Hsc_gene_12784.t1
|
— | — |
KAI1714257.1 transmembrane protein 65 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0009987_0.862|GO:0065007_0.813|GO:0050789_0.803|GO:0050794_0.780|GO:0048518_0.727|GO:0048522_0.722|GO:0003674_0.666|GO:0005488_0.625|GO:0003676_0.567|GO:0003723_0.567|GO:0008152_0.567|GO:0097159_0.567|GO:0005575_0.565|GO:0110165_0.560|GO:0044237_0.554|GO:0044238_0.553|GO:0009058_0.551|GO:0043170_0.549|GO:0009059_0.538|GO:0010467_0.538|GO:0044249_0.538|GO:0003824_0.519|GO:0019538_0.513|GO:0019222_0.511|GO:0031323_0.510|GO:0060255_0.501
|
IPR018797+9-190_15-237+
|
— |
PF10239+9-190+Protein_of_unknown_function_(DUF2465)
|
— |
PTHR31353+15-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
161-263
|
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
28928.340
|
9.797
|
8.500
|
28.137
|
9.506
|
49.810
|
50.190
|
16.350
|
11.787
|
50.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
360.535
|
280.757
|
325.455
|
443.575
|
710.083
|
684.629
|
756.944
|
292.461
|
195.675
|
120.370
|
152.644
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.523
|
0.557
|
0.648
|
— | — |
-1.331
|
1.511
|
— | — | — | — | — |
No JSON data available for plots.