Hg_chrom1_TN10mRNA_1744
Organism: Heterodera glycines Gene Locus: chr1:15290418-15291430 Feature type: polypeptideProtein Sequence
Length: 258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.946 | 0.901 | 0.634 | 0.936 | 0.646 | 0.795 | 0.784 | 2.519 | 1.034 | 1.938 | 0.646 | 2.052 | 1.723 | 0.82 | 1.107 | 0.997 | 0.762 | 0.998 | 0.298 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1674
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-25
|
1.000
|
29-49
|
1.000
|
— | — |
0.000
|
— | — |
0.105
|
0.970
|
0.022
|
0.131
|
0.046
|
0.076
|
0.164
|
0.045
|
0.118
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006329
|
1.000
|
1.000
|
Hsc_gene_12785.t1
|
Hsc_gene_12785.t1
|
— |
Q4VAE3.1 Transmembrane protein 65 [Mus musculus]
|
KAH7706012.1 Transmembrane protein 65 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0065007_0.788|GO:0050789_0.779|GO:0032501_0.756|GO:0032502_0.732|GO:0048856_0.732|GO:0007275_0.718|GO:0048731_0.713|GO:0051239_0.692|GO:0048513_0.691|GO:0003008_0.688|GO:0003013_0.679|GO:0044057_0.679|GO:0008015_0.677|GO:0072359_0.675|GO:0003015_0.670|GO:0003205_0.670|GO:0003231_0.670|GO:0007507_0.670|GO:0008016_0.670|GO:0060047_0.670|GO:0061337_0.670|GO:1903522_0.670|GO:1903779_0.670|GO:0005575_0.624|GO:0110165_0.624|GO:0016020_0.579|GO:0005622_0.538|GO:0005737_0.513
|
IPR019537+79-245_130-236+
|
— |
PF10507+130-236+Transmembrane_protein_65
|
— |
PTHR21706+79-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
28691.600
|
8.822
|
12.500
|
22.093
|
13.566
|
40.698
|
59.302
|
14.729
|
7.364
|
47.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
405.566
|
348.257
|
534.483
|
378.961
|
356.616
|
340.912
|
473.720
|
484.993
|
205.163
|
526.251
|
388.642
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.389
|
— |
-0.388
|
— | — |
0.484
|
0.406
|
— | — | — | — | — | — |
No JSON data available for plots.