Hg_chrom1_TN10mRNA_1745
Organism: Heterodera glycines Gene Locus: chr1:15291837-15295328 Feature type: polypeptideProtein Sequence
Length: 805
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.098 | 0.994 | 0.685 | 1.366 | 1.242 | 0.621 | 1.677 | 0.773 | 1.108 | 1.092 | 2.192 | 1.518 | 1.051 | 1.014 | 0.763 | 0.937 | 0.885 | 1.051 | 0.658 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.787
|
0.084
|
0.002
|
0.606
|
0.024
|
0.058
|
0.033
|
0.005
|
0.104
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006330
|
1.000
|
1.000
|
Hsc_gene_12786.t1
|
Hsc_gene_12786.t1
|
— |
Q21776.1 Mitotic checkpoint serine/threonine-protein kinase bub-1 [Caenorhabditis elegans]
|
KAI1700202.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468|GO:0007094
|
GO:0008150_0.871|GO:0005575_0.842|GO:0110165_0.838|GO:0009987_0.775|GO:0005622_0.740|GO:0003674_0.723|GO:0065007_0.665|GO:0050896_0.653|GO:0050789_0.640|GO:0050794_0.603|GO:0043226_0.593|GO:0051716_0.580|GO:0016020_0.574|GO:0043229_0.557|GO:0023052_0.501
|
IPR000719+508-769_508-801_509-773+|IPR008271+629-641+|IPR011009+500-753+|IPR015661+43-138+|IPR017441+514-537+
|
SM00220+508-769+
|
PF00069+509-773+Protein_kinase_domain
|
— |
PTHR14030+43-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
193-242;281-480
|
3.000
|
1-192;243-280;481-805
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
91851.570
|
6.596
|
1.500
|
29.193
|
12.422
|
49.814
|
50.186
|
15.528
|
13.665
|
46.957
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1088.536
|
353.091
|
411.962
|
967.632
|
1565.941
|
1429.562
|
2206.026
|
661.178
|
716.581
|
1376.637
|
1093.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.317
|
1.343
|
0.663
|
— |
0.637
|
-1.226
|
1.885
|
— | — | — | — | — |
No JSON data available for plots.