SCN Proteipedia

Hg_chrom1_TN10mRNA_1747

Organism: Heterodera glycines Gene Locus: chr1:15301566-15307998 Feature type: polypeptide

Protein Sequence

Length: 1,406

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.819	1.373	0.983	1.202	0.996	0.857	0.669	1.138	1.043	1.346	0.636	1.171	1.778	0.684	1.335	1.565	0.723	0.797	0.657	0.628	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1677	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|lysosome_vacuole	—	RRAELNRRAKEEKLKKREA	—	—	48-70	0.997	—	—	0.001	—	—	0.266	0.202	0.047	0.517	0.214	0.696	0.448	0.072	0.194	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006332	1.000	1.000	Hsc_gene_12788.t1	Hsc_gene_12788.t1	—	Q9Y2I7.3 1-phosphatidylinositol 3-phosphate 5-kinase [Homo sapiens]	KAI1705303.1 phosphatidylinositol-4-phosphate 5-Kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000285\|GO:0005524\|GO:0046488\|GO:0046872\|GO:0052742	GO:0008150_0.880\|GO:0005575_0.817\|GO:0009987_0.815\|GO:0110165_0.815\|GO:0003674_0.761\|GO:0005622_0.738\|GO:0016020_0.718\|GO:0043226_0.652\|GO:0005737_0.641\|GO:0043229_0.628\|GO:0071944_0.599\|GO:0043227_0.594\|GO:0043231_0.584\|GO:0005886_0.570\|GO:0003824_0.553\|GO:0071840_0.529\|GO:0016043_0.526\|GO:0016740_0.513	IPR000306+147-216_152-214+\|IPR002423+371-546+\|IPR002498+1068-1392_1101-1393_1168-1336_1340-1389+\|IPR011011+151-221+\|IPR013083+140-218+\|IPR017455+155-215+\|IPR027409+371-535_372-535+\|IPR027483+1250-1393+\|IPR027484+1102-1248+\|IPR044769+1128-1392+	SM00064+147-216+\|SM00330+1101-1393+	PF00118+371-546+TCP-1/cpn60_chaperonin_family\|PF01363+152-214+FYVE_zinc_finger\|PF01504+1168-1336_1340-1389+Phosphatidylinositol-4-phosphate_5-Kinase	G3DSA:3.30.810.10:FF:000001+1251-1393+1-phosphatidylinositol_3-phosphate_5-kinase_FAB1\|G3DSA:3.50.7.10:FF:000007+370-535+1-phosphatidylinositol_3-phosphate_5-kinase_isoform_X1	PTHR45748+74-263+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1406	7k2v_P	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.774	157251.120	6.841	7.000	24.395	11.664	49.004	50.996	13.016	11.380	51.636

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightcyan	1947.533	2992.836	2068.837	1894.225	2260.374	2225.153	2995.659	1893.784	1019.802	1631.527	1369.359

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.763	-0.797	—	0.223	—	0.439	-0.339	0.804	—	—	—	—	—

No JSON data available for plots.

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