Hg_chrom1_TN10mRNA_1749
Organism: Heterodera glycines Gene Locus: chr1:15309976-15311476 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 0.783 | 0.874 | 1.658 | 1.122 | 1.603 | 0.63 | 1.683 | 1.389 | 1.299 | 0.583 | 0.848 | 1.603 | 0.647 | 1.276 | 0.755 | 0.867 | 0.656 | 1.849 | 0.848 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.460
|
0.267
|
0.003
|
0.735
|
0.338
|
0.335
|
0.419
|
0.007
|
0.167
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006334
|
1.000
|
1.000
|
Hsc_gene_12790.t1
|
Hsc_gene_12790.t1
|
— |
Q5RDB1.2 MOB-like protein phocein [Pongo abelii]
|
KAH7731604.1 Mob1/phocein family protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.877|GO:0008150_0.754|GO:0009987_0.689|GO:0005622_0.684|GO:0016020_0.642|GO:0005737_0.631|GO:0071944_0.546|GO:0065007_0.541|GO:0005886_0.540|GO:0050789_0.525|GO:0050794_0.505
|
IPR005301+26-202_36-205_47-202+|IPR036703+16-206_24-205+
|
SM01388+36-205+
|
PF03637+47-202+Mob1/phocein_family
|
— |
PTHR22599+26-202+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
7k36_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
23841.250
|
6.584
|
0.500
|
25.000
|
14.423
|
45.192
|
54.808
|
13.462
|
11.538
|
45.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1330.551
|
1393.477
|
970.422
|
747.148
|
848.637
|
936.674
|
1732.566
|
1383.964
|
582.354
|
2379.561
|
1609.329
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.752
|
-1.036
|
-0.268
|
0.151
|
0.158
|
0.898
|
0.456
|
0.469
|
-2.148
|
— | — | — | — |
No JSON data available for plots.