Hg_chrom1_TN10mRNA_175
Organism: Heterodera glycines Gene Locus: chr1:1232190-1234543 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 0.995 | 0.849 | 0.805 | 1.167 | 0.798 | 1.019 | 1.946 | 0.692 | 0.999 | 0.649 | 1.144 | 1.297 | 0.973 | 1.032 | 1.001 | 1.084 | 1.238 | 0.599 | 1.602 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_170
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.200
|
0.118
|
0.668
|
0.212
|
0.043
|
0.064
|
0.020
|
0.086
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005594
|
1.000
|
1.000
|
Hsc_gene_22567.t1
|
— | — |
O44750.1 Xaa-Pro aminopeptidase app-1 [Caenorhabditis elegans]
|
KAH7723646.1 APP-1 protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.843|GO:0110165_0.840|GO:0008150_0.711|GO:0005622_0.684|GO:0005737_0.661|GO:0003674_0.657|GO:0003824_0.558|GO:0016020_0.517|GO:0008152_0.504
|
IPR000994+5-155+|IPR032416+193-257+|IPR036005+2-257_6-164+|IPR050422+5-257+
|
— |
PF00557+5-155+Metallopeptidase_family_M24|PF16188+193-257+C-terminal_region_of_peptidase_M24
|
— |
PTHR43763+5-257+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
28662.200
|
6.332
|
-1.000
|
24.903
|
14.786
|
45.914
|
54.086
|
13.230
|
11.673
|
53.307
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
magenta
|
432.284
|
405.166
|
435.892
|
356.267
|
448.176
|
886.285
|
686.847
|
543.935
|
338.368
|
226.506
|
274.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.323
|
-0.182
|
0.299
|
0.998
|
-0.357
|
-0.809
|
0.479
|
— | — | — | — | — |
No JSON data available for plots.