Hg_chrom1_TN10mRNA_1750
Organism: Heterodera glycines Gene Locus: chr1:15312778-15315926 Feature type: polypeptideProtein Sequence
Length: 557
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.106 | 0.752 | 1.273 | 0.062 | 1.586 | 1.381 | 0.791 | 1.077 | 1.476 | 0.704 | 1.278 | 1.162 | 0.798 | 1.208 | 1.832 | 0.821 | 0.736 | 0.517 | 0.691 | 0.422 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRIAQNKKTEQEKRMRE,KRKATESEELPSGIKKSRR,RKATESEELPSGIKKSRR.,HRRDRNIARSRPDKLEKLKRDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.903
|
0.077
|
0.014
|
0.294
|
0.057
|
0.017
|
0.072
|
0.020
|
0.042
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006335
|
1.000
|
1.000
|
Hsc_gene_12791.t1
|
Hsc_gene_12791.t1
|
— |
P39736.1 Puff-specific protein Bx42 [Drosophila melanogaster]
|
KAI1707361.1 SKIP/SNW domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0005681
|
GO:0008150_0.867|GO:0005575_0.833|GO:0110165_0.830|GO:0005622_0.806|GO:0043226_0.767|GO:0016020_0.753|GO:0043229_0.751|GO:0009987_0.742|GO:0043227_0.689|GO:0043231_0.665|GO:0005634_0.636|GO:0065007_0.630|GO:0050789_0.615|GO:0008152_0.553|GO:0009058_0.552|GO:0043170_0.545|GO:0044237_0.544|GO:0009059_0.537|GO:0044249_0.537|GO:0010467_0.534|GO:0050794_0.520
|
IPR004015+190-349+|IPR017862+6-545+
|
— |
PF02731+190-349+SKIP/SNW_domain
|
— |
PTHR12096+6-545+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-90;128-557
|
1.000
|
91-127
|
6qdv_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
62807.540
|
9.396
|
11.000
|
36.086
|
7.361
|
54.937
|
45.063
|
19.569
|
16.517
|
46.499
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkorange
|
1653.160
|
2073.269
|
1703.240
|
1885.940
|
2041.845
|
1795.416
|
2210.092
|
1514.123
|
1602.045
|
1072.071
|
1299.203
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.513
|
-0.274
|
0.256
|
— |
-0.171
|
0.312
|
-0.349
|
0.689
|
— | — | — | — | — |
No JSON data available for plots.