Hg_chrom1_TN10mRNA_1751
Organism: Heterodera glycines Gene Locus: chr1:15318854-15322129 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 0.904 | 0.606 | 0.511 | 1.698 | 0.855 | 0.992 | 0.37 | 0.535 | 1.176 | 0.842 | 1.743 | 0.926 | 0.997 | 1.512 | 1.534 | 1.214 | 0.673 | 0.142 | 0.218 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1681
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
AAAED,RKRPAAIQELLEKKRARL,KKRARLAHNESGSKSERR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.924
|
0.065
|
0.021
|
0.283
|
0.023
|
0.007
|
0.031
|
0.031
|
0.035
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006336
|
1.000
|
1.000
|
Hsc_gene_12792.t1
|
Hsc_gene_12792.t1;Hsc_gene_12792.t2;Hsc_gene_12792.t3
|
— |
Q6P0E7.1 Transcription factor AP-2-epsilon [Danio rerio]
|
KAI3422511.1 Transcription factor AP-2-delta [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0005634|GO:0006355
|
GO:0008150_0.872|GO:0009987_0.823|GO:0005575_0.768|GO:0110165_0.760|GO:0065007_0.735|GO:0050789_0.722|GO:0050794_0.709|GO:0005622_0.696|GO:0003674_0.675|GO:0005488_0.651|GO:0043226_0.642|GO:0008152_0.628|GO:0043170_0.628|GO:0043229_0.625|GO:0019222_0.624|GO:0044238_0.622|GO:0048518_0.621|GO:0044237_0.620|GO:0031323_0.619|GO:0009058_0.617|GO:0009059_0.615|GO:0044249_0.615|GO:0048522_0.614|GO:0060255_0.614|GO:0010467_0.612|GO:0080090_0.611|GO:0032501_0.607|GO:0006139_0.606|GO:0032502_0.604|GO:0009889_0.601|GO:0031326_0.601|GO:0034654_0.600|GO:0010468_0.596|GO:0010556_0.596|GO:0016020_0.595|GO:0090304_0.595|GO:0016070_0.592|GO:0032774_0.592|GO:0141187_0.592|GO:0009893_0.590|GO:0010604_0.584|GO:0019219_0.582|GO:0031325_0.578|GO:0051252_0.577|GO:0009891_0.576|GO:0031328_0.575|GO:0006351_0.573|GO:0006355_0.572|GO:2001141_0.572|GO:0010557_0.571|GO:0045935_0.564|GO:0006366_0.561|GO:0051254_0.560|GO:0006357_0.557|GO:0048856_0.556|GO:0045893_0.555|GO:1902680_0.555|GO:0045944_0.549|GO:0097159_0.546|GO:0007275_0.533|GO:0003676_0.531|GO:0048731_0.527|GO:0003677_0.501|GO:0043227_0.501
|
IPR004979+315-529+|IPR013854+320-514_358-372_373-388_389-403+
|
— |
PF03299+320-514+Transcription_factor_AP-2
|
— |
PTHR10812+315-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-180;259-307;531-540
|
2.000
|
181-258;308-530
|
8j0q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
58193.260
|
6.229
|
-1.000
|
27.222
|
5.000
|
52.593
|
47.407
|
13.704
|
13.519
|
54.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
811.227
|
1060.846
|
622.785
|
734.923
|
644.326
|
713.733
|
486.484
|
961.276
|
872.796
|
935.380
|
908.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.999
|
-0.667
|
0.348
|
-0.222
|
— |
-0.544
|
— |
-0.841
|
— | — | — | — | — |
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