Hg_chrom1_TN10mRNA_1755
Organism: Heterodera glycines Gene Locus: chr1:15379146-15381159 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 1.122 | 0.585 | 1.202 | 0.67 | 1.237 | 0.894 | 0.536 | 1.489 | 1.051 | 0.731 | 1.104 | 1.489 | 0.98 | 1.696 | 0.957 | 0.967 | 1.056 | 1.444 | 0.552 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
3-33
|
0.692
|
— | — | — | — |
0.000
|
— | — |
0.426
|
0.234
|
0.046
|
0.631
|
0.260
|
0.104
|
0.176
|
0.052
|
0.239
|
0.250
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000367
|
6.000
|
2.000
|
Hsc_gene_12734.t1;Hsc_gene_25079.t1
|
Hsc_gene_12734.t1;Hsc_gene_25079.t1
|
— |
Q9UAV5.1 Malate dehydrogenase, cytoplasmic [Caenorhabditis elegans]
|
KAI3421925.1 Malate dehydrogenase, cytoplasmic [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006108|GO:0016491|GO:0016615
|
GO:0008150_0.833|GO:0005575_0.788|GO:0110165_0.773|GO:0005622_0.628|GO:0003674_0.626|GO:0009987_0.612|GO:0008152_0.568|GO:0016020_0.545|GO:0005737_0.524|GO:0044238_0.506
|
IPR000626+62-110_63-112+|IPR001236+1-51+|IPR010945+1-63+|IPR013320+248-294+|IPR029071+63-112_111-175+|IPR036291+1-61+
|
— |
PF00056+1-51+lactate/malate_dehydrogenase,_NAD_binding_domain|PF00240+62-110+Ubiquitin_family
|
— |
PTHR23382+1-63+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
359-373
|
1.000
|
1-358
|
9d2f_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
41635.230
|
10.250
|
24.000
|
21.448
|
10.188
|
43.700
|
56.300
|
14.209
|
7.239
|
51.475
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
253.903
|
706.833
|
357.927
|
331.358
|
197.696
|
215.323
|
283.919
|
399.224
|
12.759
|
166.651
|
100.697
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.213
|
-1.230
|
— |
-0.778
|
— |
0.409
|
0.789
|
-0.351
|
— |
4.918
|
— | — | — |
No JSON data available for plots.