Hg_chrom1_TN10mRNA_1756
Organism: Heterodera glycines Gene Locus: chr1:15382195-15385903 Feature type: polypeptideProtein Sequence
Length: 480
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 0.775 | 1.136 | 0.575 | 1.076 | 1.015 | 0.67 | 1.979 | 1.528 | 1.126 | 0.852 | 2.574 | 1.215 | 1.122 | 1.19 | 0.595 | 0.717 | 0.979 | 1.763 | 1.164 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1686
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.823
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.142
|
0.950
|
0.016
|
0.220
|
0.051
|
0.059
|
0.074
|
0.005
|
0.029
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006339
|
1.000
|
1.000
|
Hsc_gene_12795.t1
|
Hsc_gene_12795.t1
|
— |
Q93873.2 Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial [Caenorhabditis elegans]
|
KAI3422514.1 1,3-beta-glucanosyltransferase gas1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016651|GO:0048038|GO:0051287
|
GO:0005575_0.836|GO:0110165_0.808|GO:0016020_0.726|GO:0008150_0.690|GO:0005622_0.658|GO:0005737_0.646|GO:0009987_0.617|GO:0043226_0.607|GO:0043229_0.592|GO:0043227_0.578|GO:0043231_0.566
|
IPR001135+210-480+|IPR014029+133-144+|IPR022885+89-480_90-480_96-480+|IPR029014+96-480_106-480+
|
— |
PF00346+210-480+Respiratory-chain_NADH_dehydrogenase,_49_Kd_subunit
|
G3DSA:1.10.645.10:FF:000005+96-480+NADH-quinone_oxidoreductase_subunit_D
|
PTHR11993+90-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-480
|
8xo0_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
55583.130
|
6.810
|
3.500
|
28.125
|
14.583
|
43.958
|
56.042
|
15.417
|
12.708
|
43.958
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
1974.951
|
2093.282
|
1662.330
|
1682.282
|
2318.167
|
2316.808
|
2062.412
|
1247.243
|
3051.028
|
1333.694
|
2069.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.561
|
-0.453
|
0.125
|
0.431
|
— |
-0.158
|
-1.000
|
0.869
|
— | — | — | — | — |
No JSON data available for plots.