Hg_chrom1_TN10mRNA_1757
Organism: Heterodera glycines Gene Locus: chr1:15385996-15388001 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 0.664 | 0.803 | 0.358 | 1.515 | 0.866 | 0.835 | 1.299 | 1.212 | 1.229 | 0.866 | 1.681 | 0.938 | 0.749 | 1.325 | 0.928 | 0.809 | 1.141 | 0.999 | 1.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1687
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
54-74
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.501
|
0.395
|
0.166
|
0.633
|
0.161
|
0.261
|
0.175
|
0.152
|
0.227
|
0.134
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006340
|
1.000
|
1.000
|
Hsc_gene_12796.t1
|
Hsc_gene_12796.t1
|
— |
A8Y0L5.2 GDP-mannose 4,6 dehydratase 1 [Caenorhabditis briggsae]
|
KAI1714501.1 GDP-mannose 4,6 dehydratase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008446|GO:0019673
|
GO:0003674_0.810|GO:0008150_0.754|GO:0003824_0.727|GO:0009987_0.664|GO:0008152_0.633|GO:0044238_0.602|GO:0005575_0.583|GO:0110165_0.583|GO:0044237_0.577|GO:0009058_0.564|GO:0016829_0.545|GO:0044281_0.543|GO:1901135_0.503
|
IPR006368+23-382_36-378_36-381+|IPR016040+39-371+|IPR036291+36-376+
|
— |
PF16363+39-371+GDP-mannose_4,6_dehydratase
|
G3DSA:3.40.50.720:FF:000924+33-236+GDP-mannose_4,6_dehydratase
|
PTHR43715+23-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
5in5_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.533
|
43678.870
|
6.507
|
0.000
|
28.312
|
12.208
|
45.974
|
54.026
|
14.805
|
13.506
|
45.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
tan
|
5748.841
|
2963.952
|
3697.224
|
1296.908
|
996.072
|
11052.576
|
7524.920
|
4519.567
|
16075.336
|
1075.470
|
7503.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.330
|
-1.403
|
-0.412
|
3.485
|
-0.543
|
-1.392
|
0.878
|
3.773
|
-3.455
|
— | — | — |
No JSON data available for plots.