Hg_chrom1_TN10mRNA_1758
Organism: Heterodera glycines Gene Locus: chr1:15388982-15390701 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.255 | 1.033 | 0.784 | 0.9 | 0.583 | 0.643 | 1.562 | 1.389 | 1.382 | 0.646 | 1.504 | 2.367 | 1.038 | 1.044 | 0.771 | 0.838 | 1.076 | 1.311 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRNSHILTGFTFRRRNI
|
27-66
|
0.883
|
37-77
|
0.917
|
— | — |
0.000
|
— | — |
0.172
|
0.316
|
0.092
|
0.245
|
0.890
|
0.493
|
0.300
|
0.007
|
0.261
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006341
|
1.000
|
1.000
|
Hsc_gene_12797.t1
|
Hsc_gene_12797.t1
|
— |
Q3T0T0.1 Glycerophosphodiester phosphodiesterase 1 [Bos taurus]
|
KAI1715925.1 glycerophosphoryl diester phosphodiesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0008081
|
GO:0008150_0.845|GO:0005575_0.769|GO:0110165_0.762|GO:0009987_0.753|GO:0003674_0.654|GO:0016020_0.610|GO:0003824_0.555
|
IPR017946+55-339_59-337+|IPR030395+57-337_62-331+
|
— |
PF03009+62-331+Glycerophosphoryl_diester_phosphodiesterase_family
|
— |
PTHR46320+13-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-352
|
3qvq_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
40224.420
|
6.422
|
-0.500
|
23.580
|
15.909
|
41.761
|
58.239
|
12.500
|
11.080
|
48.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
973.984
|
507.491
|
764.276
|
710.102
|
906.505
|
1063.912
|
1223.068
|
1221.641
|
809.942
|
1254.851
|
1064.176
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.360
|
0.347
|
— |
0.321
|
0.245
|
0.211
|
— | — | — | — | — | — | — |
No JSON data available for plots.