Hg_chrom1_TN10mRNA_1759
Organism: Heterodera glycines Gene Locus: chr1:15391186-15393124 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.072 | 0.838 | 0.0 | 1.681 | 0.739 | 0.858 | 1.009 | 1.409 | 1.129 | 1.179 | 0.509 | 1.601 | 0.665 | 0.941 | 1.07 | 1.181 | 1.004 | 1.773 | 0.424 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1689
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKLEGEATANNRKAKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.347
|
0.326
|
0.035
|
0.708
|
0.374
|
0.284
|
0.385
|
0.060
|
0.241
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006342
|
1.000
|
1.000
|
Hsc_gene_12798.t1
|
Hsc_gene_12798.t1
|
— |
Q8BK64.2 Activator of 90 kDa heat shock protein ATPase homolog 1 [Mus musculus]
|
KAI1716059.1 activator of hsp90 ATPase like protein 1-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001671|GO:0051087
|
GO:0003674_0.835|GO:0005488_0.752|GO:0005515_0.720|GO:0005575_0.620|GO:0110165_0.607|GO:0008150_0.570|GO:0005622_0.553|GO:0005737_0.531|GO:0009987_0.501
|
IPR013538+226-336+|IPR015310+1-164_29-161_29-163+|IPR023393+215-343+|IPR036338+18-167_20-163+
|
SM01000+29-163+
|
PF08327+226-336+Activator_of_Hsp90_ATPase_homolog_1-like_protein|PF09229+29-161+Activator_of_Hsp90_ATPase,_N-terminal
|
— |
PTHR13009+1-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-347
|
7dmd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
39046.100
|
5.519
|
-4.500
|
29.107
|
11.527
|
51.297
|
48.703
|
14.409
|
14.697
|
47.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
4640.427
|
3531.969
|
2474.398
|
4407.328
|
5302.995
|
5046.235
|
4698.700
|
4683.678
|
4153.550
|
5882.218
|
5141.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.743
|
0.182
|
0.942
|
0.235
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.