Hg_chrom1_TN10mRNA_176
Organism: Heterodera glycines Gene Locus: chr1:1236346-1238500 Feature type: polypeptideProtein Sequence
Length: 191
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 1.339 | 0.857 | 0.542 | 1.309 | 0.94 | 1.06 | 1.571 | 0.931 | 1.274 | 0.555 | 2.464 | 2.182 | 0.705 | 2.03 | 0.449 | 0.515 | 0.635 | 1.611 | 0.308 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_171
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.725
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
7-28
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.603
|
0.391
|
0.120
|
0.533
|
0.086
|
0.037
|
0.070
|
0.004
|
0.111
|
0.280
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001034
|
4.000
|
1.000
|
Hsc_gene_20540.t1
|
— | — | — |
MBI1290910.1 Fic family protein [bacterium]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.924|GO:0003674_0.879|GO:0005575_0.835|GO:0110165_0.832|GO:0003824_0.805|GO:0050896_0.768|GO:0016020_0.746|GO:0006950_0.719|GO:0016740_0.708|GO:0016772_0.663|GO:0071944_0.659|GO:0016779_0.655|GO:0070566_0.650|GO:0070733_0.650|GO:0005886_0.643|GO:0009987_0.600|GO:0005622_0.599|GO:0005737_0.590|GO:0008152_0.577|GO:0044238_0.543|GO:0043226_0.541|GO:0005488_0.529|GO:0043229_0.526|GO:0043227_0.515|GO:0043231_0.515|GO:0043170_0.502
|
IPR003812+37-186_65-145+|IPR036597+4-187_25-174+|IPR040198+34-172+
|
— |
PF02661+65-145+Fic/DOC_family
|
— |
PTHR13504+34-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12
|
1.000
|
13-191
|
6i7h_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.735
|
22048.230
|
8.307
|
5.000
|
29.319
|
14.136
|
45.026
|
54.974
|
16.754
|
12.565
|
42.932
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
14.341
|
7.266
|
14.008
|
8.683
|
8.141
|
12.967
|
5.289
|
9.129
|
39.937
|
8.235
|
21.822
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.278
|
— | — | — | — | — | — | — |
No JSON data available for plots.