Hg_chrom1_TN10mRNA_1760
Organism: Heterodera glycines Gene Locus: chr1:15396477-15402197 Feature type: polypeptideProtein Sequence
Length: 1,109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 0.818 | 0.754 | 0.715 | 1.142 | 1.295 | 0.73 | 1.668 | 0.802 | 1.194 | 0.478 | 0.796 | 0.952 | 1.144 | 1.417 | 1.507 | 0.961 | 1.066 | 0.624 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1690
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.731
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.227
|
0.131
|
0.015
|
0.631
|
0.140
|
0.419
|
0.294
|
0.054
|
0.449
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006343
|
1.000
|
1.000
|
Hsc_gene_12800.t1
|
Hsc_gene_12800.t1
|
— |
Q9P2F8.2 Signal-induced proliferation-associated 1-like protein 2 [Homo sapiens]
|
KAI3422519.1 Signal-induced proliferation-associated 1-like protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005096|GO:0005515|GO:0051056
|
GO:0008150_0.845|GO:0009987_0.801|GO:0005575_0.785|GO:0110165_0.780|GO:0065007_0.652|GO:0005622_0.638|GO:0050789_0.608|GO:0050794_0.594|GO:0003674_0.553|GO:0016020_0.536
|
IPR000331+378-595_407-589+|IPR001478+738-813+|IPR035974+261-604_391-576+|IPR036034+735-814_746-812+|IPR050989+101-976+
|
— |
PF02145+407-589+Rap/ran-GAP|PF21022+270-383+Rap/Ran-GAP_protein_dimerization_domain
|
G3DSA:3.40.50.11210:FF:000002+392-576+Signal-induced_proliferation-associated_1-like_protein_1
|
PTHR15711+101-976+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-73;187-235;909-989;1107-1109
|
3.000
|
74-186;236-908;990-1106
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
121417.420
|
6.896
|
8.500
|
24.436
|
9.648
|
49.414
|
50.586
|
13.436
|
11.001
|
54.554
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1322.153
|
2086.260
|
2736.994
|
1404.559
|
1127.797
|
794.901
|
1423.731
|
1571.795
|
742.642
|
1047.673
|
916.946
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.163
|
-0.708
|
-0.854
|
-0.348
|
-0.490
|
0.852
|
0.883
|
— | — | — | — | — | — |
No JSON data available for plots.