SCN Proteipedia

Hg_chrom1_TN10mRNA_1761

Organism: Heterodera glycines Gene Locus: chr1:15402604-15407278 Feature type: polypeptide

Protein Sequence

Length: 964

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.086	1.399	1.056	0.429	1.556	0.851	0.741	1.245	0.853	1.234	0.77	2.014	0.836	0.638	1.821	0.904	0.952	0.692	0.798	0.519	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1691	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKR,RKARKRQRKKMGKTA	—	—	—	—	—	—	0.000	—	—	0.839	0.173	0.004	0.354	0.032	0.022	0.059	0.041	0.039	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006344	1.000	1.000	Hsc_gene_12801.t1	—	—	G5EBX6.1 Exosome complex component 10 homolog [Caenorhabditis elegans]	KAH7727259.1 3'-5' exonuclease [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0000175\|GO:0000467\|GO:0003676\|GO:0006139\|GO:0008408\|GO:0044237	GO:0008150_0.901\|GO:0009987_0.846\|GO:0005575_0.811\|GO:0110165_0.811\|GO:0008152_0.754\|GO:0005622_0.743\|GO:0009058_0.730\|GO:0044237_0.725\|GO:0043170_0.716\|GO:0044249_0.710\|GO:0009059_0.702\|GO:0010467_0.688\|GO:0044238_0.674\|GO:0065007_0.652\|GO:0003674_0.649\|GO:0050789_0.633\|GO:0006139_0.632\|GO:0050794_0.614\|GO:0090304_0.609\|GO:0016070_0.602\|GO:0016020_0.585\|GO:0043226_0.571\|GO:0019222_0.556\|GO:0043229_0.555\|GO:0031323_0.548\|GO:0060255_0.545\|GO:0009889_0.534\|GO:0031326_0.534\|GO:0010468_0.533\|GO:0010556_0.533\|GO:0071840_0.523\|GO:0016043_0.511\|GO:0003824_0.504	IPR002121+558-638_561-626+\|IPR002562+333-509_337-508+\|IPR010997+541-638+\|IPR012337+335-511+\|IPR036397+198-549+\|IPR044876+550-643+\|IPR045092+24-914+	SM00341+558-638+\|SM00474+333-509+	PF00570+561-626+HRDC_domain\|PF01612+337-508+3'-5'_exonuclease	G3DSA:1.10.150.80:FF:000001+546-640+Putative_exosome_component_10	PTHR12124+24-914+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-20;229-326;687-964	2.000	21-228;327-686	2cpr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.608	108685.240	6.584	1.000	31.639	8.299	53.112	46.888	16.494	15.145	48.651

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2394.157	3077.968	2036.190	2218.013	2398.951	2551.027	2433.104	1635.981	3896.961	1420.001	2481.555

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.826	-0.610	0.233	—	—	—	-0.746	0.716	—	—	—	—	—

No JSON data available for plots.

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