Hg_chrom1_TN10mRNA_1763
Organism: Heterodera glycines Gene Locus: chr1:15407683-15412777 Feature type: polypeptideProtein Sequence
Length: 1,039
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 0.515 | 0.77 | 0.1 | 1.508 | 1.752 | 0.733 | 1.155 | 0.834 | 0.715 | 1.196 | 1.132 | 0.454 | 1.555 | 1.709 | 1.251 | 1.215 | 0.948 | 0.296 | 0.311 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1692
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR,KRQRTEGEDAEGIGKRPKR,QHKRRPSHTKKRLPSPPPVHRDAFPPAKNPSPSRARSPSRNGKSGDAKRTPPRRTHPLPPKTHG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.758
|
0.076
|
0.017
|
0.377
|
0.038
|
0.034
|
0.042
|
0.025
|
0.089
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003090
|
2.000
|
1.000
|
Hsc_gene_12802.t1
|
Hsc_gene_12802.t1
|
— |
Q95XU6.2 Zinc finger CCCH domain-containing protein 14 [Caenorhabditis elegans]
|
KAI1711803.1 RNA-binding, nab2-type zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008143|GO:0043488
|
GO:0005575_0.957|GO:0110165_0.952|GO:0005622_0.920|GO:0016020_0.890|GO:0043226_0.878|GO:0043229_0.860|GO:0043227_0.792|GO:0043231_0.765|GO:0005634_0.763|GO:0031974_0.552|GO:0031981_0.552|GO:0043233_0.552|GO:0070013_0.552|GO:0005654_0.504
|
IPR040366+2-211+
|
— | — | — |
PTHR14738+2-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-1039
|
1.000
|
1-70
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.908
|
114875.030
|
10.301
|
43.000
|
31.858
|
5.390
|
57.074
|
42.926
|
18.576
|
13.282
|
51.492
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
2013.312
|
2769.177
|
1907.827
|
1724.860
|
1859.411
|
1581.951
|
2386.032
|
1118.025
|
2532.683
|
1903.496
|
2173.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.767
|
-0.820
|
— | — |
-0.218
|
0.604
|
-0.605
|
1.236
|
— | — | — | — | — |
No JSON data available for plots.