Hg_chrom1_TN10mRNA_1764
Organism: Heterodera glycines Gene Locus: chr1:15412993-15418189 Feature type: polypeptideProtein Sequence
Length: 957
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.264 | 1.142 | 1.216 | 1.117 | 1.028 | 1.152 | 0.896 | 1.515 | 0.836 | 1.2 | 0.412 | 1.045 | 0.871 | 0.683 | 1.322 | 1.403 | 0.822 | 0.855 | 0.965 | 0.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1693
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.257
|
0.024
|
0.628
|
0.161
|
0.237
|
0.322
|
0.195
|
0.187
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006345
|
1.000
|
1.000
|
Hsc_gene_12803.t1
|
Hsc_gene_12803.t1
|
— |
Q9NVR0.1 Kelch-like protein 11 [Homo sapiens]
|
KHN73577.1 Influenza virus NS1A-binding -like protein [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.841|GO:0005575_0.755|GO:0110165_0.732|GO:0009987_0.691|GO:0005622_0.569|GO:0065007_0.501
|
IPR000210+114-160_123-256_123-286_224-284+|IPR006652+638-684_650-698_688-728_699-745_734-778_746-792_782-825_793-839_828-873_840-887_889-935+|IPR011043+634-906+|IPR011333+90-285_96-286+|IPR015915+622-756_758-956+
|
SM00225+123-286+|SM00612+650-698_699-745_746-792_793-839_840-887_889-935+
|
PF00651+114-160_224-284+BTB/POZ_domain|PF01344+638-684_688-728_734-778_782-825_828-873+Kelch_motif
|
— |
PTHR45632+96-341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-111;165-221;393-453;917-957
|
3.000
|
112-164;222-392;454-916
|
7pvp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
103462.180
|
5.201
|
-20.500
|
25.078
|
8.464
|
49.321
|
50.679
|
12.226
|
12.853
|
57.262
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
3111.546
|
5710.929
|
5825.086
|
3103.771
|
2622.223
|
2622.337
|
3363.028
|
3401.396
|
2273.458
|
1914.632
|
2068.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.201
|
-1.017
|
-0.800
|
-0.276
|
— |
0.369
|
— | — | — | — | — | — | — |
No JSON data available for plots.