SCN Proteipedia

Hg_chrom1_TN10mRNA_1765

Organism: Heterodera glycines Gene Locus: chr1:15421756-15427895 Feature type: polypeptide

Protein Sequence

Length: 809

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.38	0.834	0.899	1.108	0.948	0.761	0.662	1.916	0.714	1.203	0.524	0.873	1.133	0.975	1.589	1.66	0.689	0.824	1.141	0.473	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1694	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.910

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RHGKRRG	—	—	—	—	—	—	0.000	—	—	0.237	0.150	0.032	0.626	0.224	0.348	0.327	0.012	0.517	0.079

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006346	1.000	1.000	Hsc_gene_12804.t1	Hsc_gene_12804.t1	—	Q8IV61.1 Ras guanyl-releasing protein 3 [Homo sapiens]	KAI1711798.1 rasGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0005509\|GO:0007264	GO:0008150_0.931\|GO:0005575_0.861\|GO:0110165_0.855\|GO:0003674_0.833\|GO:0009987_0.832\|GO:0065007_0.756\|GO:0050789_0.744\|GO:0050794_0.734\|GO:0050896_0.728\|GO:0005488_0.705\|GO:0005622_0.700\|GO:0051716_0.658\|GO:0005515_0.634\|GO:0023052_0.612\|GO:0007154_0.610\|GO:0007165_0.594\|GO:0016020_0.560\|GO:0098772_0.512\|GO:0030234_0.507	IPR001895+151-387_151-392_155-391_158-316+\|IPR002048+432-467_436-464_436-491_440-490_465-493_468-496+\|IPR002219+522-570_523-570_523-571+\|IPR008937+73-393+\|IPR011992+413-493+\|IPR018247+445-457_474-486+\|IPR023578+19-400+\|IPR036964+143-423+\|IPR046349+521-571+	SM00054+436-464_465-493+\|SM00109+523-570+\|SM00147+151-392+	PF00130+523-571+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)\|PF00617+158-316+RasGEF_domain\|PF13499+440-490+EF-hand_domain_pair	—	PTHR23113+73-393+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	597-809	1.000	1-596	2ma2_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.830	88540.740	7.911	20.500	25.711	11.001	48.084	51.916	15.080	10.630	55.501

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	735.163	1149.612	1580.488	963.679	441.691	753.478	422.257	836.796	958.623	191.869	520.478

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.230	-0.392	-0.605	-1.157	0.784	-0.826	—	-0.848	—	—	—	—	—

No JSON data available for plots.

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