SCN Proteipedia

Hg_chrom1_TN10mRNA_1769

Organism: Heterodera glycines Gene Locus: chr1:15440854-15445884 Feature type: polypeptide

Protein Sequence

Length: 1,076

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.07	0.908	1.115	0.897	1.27	1.096	0.42	1.58	0.785	1.645	0.662	2.023	1.265	0.554	1.631	0.783	0.853	1.042	0.572	0.683	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1698	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RKKK,RKCDEIVSTIRRRCER,KKQSQQNETMTTNKNSRKK	—	—	—	—	—	—	0.000	—	—	0.592	0.231	0.010	0.477	0.064	0.145	0.118	0.015	0.087	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006349	1.000	1.000	Hsc_gene_12809.t1	Hsc_gene_12809.t1	—	—	KAI1727202.1 nuclear condensing complex subunit, c-term domain-containing protein [Ditylenchus destructor]	No	-0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000796\|GO:0007076	GO:0008150_0.963\|GO:0009987_0.916\|GO:0005575_0.890\|GO:0110165_0.886\|GO:0005622_0.820\|GO:0016020_0.811\|GO:0032501_0.785\|GO:0032502_0.768\|GO:0048856_0.768\|GO:0071840_0.767\|GO:0016043_0.766\|GO:0007275_0.747\|GO:0043226_0.747\|GO:0043229_0.740\|GO:0006996_0.711\|GO:0043227_0.706\|GO:0043231_0.697\|GO:0022414_0.695\|GO:0019953_0.685\|GO:0007049_0.684\|GO:0022402_0.684\|GO:0009790_0.683\|GO:0048285_0.683\|GO:0000280_0.680\|GO:0000278_0.677\|GO:0009792_0.677\|GO:0140014_0.677\|GO:1903047_0.677\|GO:0051321_0.676\|GO:0140013_0.676\|GO:1903046_0.676\|GO:0051276_0.675\|GO:0007059_0.674\|GO:0098813_0.673\|GO:0000070_0.670\|GO:0000819_0.670\|GO:0007135_0.670\|GO:0045132_0.670\|GO:0045144_0.670\|GO:0061983_0.670\|GO:0070192_0.670\|GO:0032991_0.648\|GO:0005634_0.603\|GO:0043228_0.600\|GO:0043232_0.600\|GO:0140513_0.555\|GO:0005694_0.550\|GO:0000785_0.546\|GO:0000796_0.540\|GO:0000803_0.540\|GO:0046536_0.540	IPR011989+75-314+\|IPR016024+82-766+\|IPR025977+666-1022+\|IPR027165+99-1064+	—	PF12719+666-1022+Nuclear_condensing_complex_subunits,_C-term_domain	—	PTHR14418+99-1064+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1076	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.638	123004.220	6.599	2.000	29.275	10.781	48.141	51.859	15.520	13.755	45.818

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	tan	826.123	1107.245	793.256	878.347	1190.349	912.144	1815.213	586.225	551.243	469.816	504.713

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.711	-0.471	0.256	0.407	-0.370	1.003	-0.743	1.773	—	—	—	—	7.135

No JSON data available for plots.

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