Hg_chrom1_TN10mRNA_1770
Organism: Heterodera glycines Gene Locus: chr1:15446294-15447713 Feature type: polypeptideProtein Sequence
Length: 425
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 0.766 | 0.513 | 2.434 | 1.255 | 1.267 | 0.924 | 1.294 | 0.627 | 0.795 | 0.856 | 1.384 | 1.046 | 1.312 | 1.873 | 0.84 | 0.771 | 0.927 | 1.267 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1699
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
GEGKKEKEEERKEG,KRRKGRGGRRRKKKRGKKE,RRKGRGGRRRKKKRGKKER,RKGRGGRRRKKKRGKKERI
|
— | — |
63-83
|
1.000
|
— | — |
0.000
|
— | — |
0.056
|
0.096
|
0.112
|
0.222
|
0.160
|
0.128
|
0.280
|
0.007
|
0.324
|
0.832
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006350
|
1.000
|
1.000
|
Hsc_gene_12810.t1
|
— | — | — |
KAI1712253.1 hypothetical protein DdX_09805 [Ditylenchus destructor]
|
No
|
-0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR36938+102-297+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
118-222
|
2.000
|
1-117;223-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
48007.070
|
8.652
|
24.500
|
27.765
|
10.588
|
46.588
|
53.412
|
17.412
|
10.353
|
51.059
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
42.611
|
128.092
|
44.154
|
36.110
|
40.339
|
60.533
|
37.933
|
58.942
|
31.046
|
10.852
|
19.506
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.767
|
-1.963
|
— | — |
0.601
|
-0.665
|
— | — | — | — | — | — | — |
No JSON data available for plots.