Hg_chrom1_TN10mRNA_1771
Organism: Heterodera glycines Gene Locus: chr1:15448047-15449456 Feature type: polypeptideProtein Sequence
Length: 185
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 0.754 | 1.474 | 0.932 | 0.721 | 0.832 | 0.708 | 2.162 | 1.441 | 1.023 | 0.901 | 1.59 | 1.952 | 0.832 | 1.103 | 0.541 | 0.62 | 1.802 | 0.416 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1700
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — |
13-34
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.545
|
0.186
|
0.013
|
0.556
|
0.105
|
0.183
|
0.116
|
0.091
|
0.131
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006351
|
1.000
|
1.000
|
Hsc_gene_12811.t1
|
Hsc_gene_12811.t1
|
— |
Q7ZV68.1 Vacuolar protein sorting-associated protein 29 [Danio rerio]
|
KAI1702673.1 calcineurin-like phosphoesterase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030904|GO:0042147
|
GO:0005575_0.851|GO:0110165_0.851|GO:0005622_0.795|GO:0005737_0.795|GO:0016020_0.744|GO:0043226_0.696|GO:0043229_0.689|GO:0043227_0.668|GO:0043231_0.668|GO:0008150_0.645|GO:0005773_0.585|GO:0071944_0.581|GO:0009987_0.576|GO:0005886_0.559|GO:0032991_0.513
|
IPR000979+1-157_1-181+|IPR024654+1-156+|IPR028661+2-178+|IPR029052+1-179_1-185+
|
— |
PF12850+1-156+Calcineurin-like_phosphoesterase_superfamily_domain
|
G3DSA:3.60.21.10:FF:000015+1-180+Vacuolar_protein_sorting-associated_protein_29
|
PTHR11124+1-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-185
|
8ttc_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
21013.360
|
6.895
|
2.000
|
28.108
|
14.595
|
42.162
|
57.838
|
15.676
|
12.432
|
49.730
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
407.274
|
469.256
|
350.853
|
503.342
|
567.375
|
634.315
|
1129.194
|
480.406
|
161.315
|
110.309
|
132.169
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.649
|
— |
0.630
|
0.141
|
0.175
|
0.842
|
-0.507
|
1.376
|
— | — | — | — | — |
No JSON data available for plots.