Hg_chrom1_TN10mRNA_1772
Organism: Heterodera glycines Gene Locus: chr1:15449642-15450975 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.201 | 1.03 | 0.939 | 0.127 | 1.599 | 1.987 | 0.527 | 1.107 | 0.902 | 0.648 | 1.733 | 2.388 | 0.718 | 0.639 | 1.581 | 0.949 | 0.665 | 0.559 | 0.568 | 0.76 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1701
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KSAKRRKL,KKTEDYKSFQRQKSAKRRK,RKAAEETGQKTNEQRQKK.
|
— | — | — | — | — | — |
0.000
|
— | — |
0.945
|
0.052
|
0.006
|
0.247
|
0.014
|
0.026
|
0.059
|
0.005
|
0.018
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006352
|
1.000
|
1.000
|
Hsc_gene_12812.t1
|
— | — | — |
KAI1731117.1 HMG-box domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR009071+28-97_29-96+|IPR036910+13-121_16-106+|IPR051965+11-213+
|
SM00398+28-97+
|
— | — |
PTHR46040+11-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-50;93-271
|
1.000
|
51-92
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
31149.180
|
10.187
|
15.000
|
36.162
|
8.118
|
59.041
|
40.959
|
21.402
|
14.760
|
42.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
809.615
|
628.599
|
567.082
|
783.094
|
938.785
|
731.185
|
706.147
|
434.752
|
1909.480
|
313.838
|
997.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.378
|
0.180
|
0.574
|
0.230
|
-0.346
|
— |
-0.853
|
0.842
|
2.490
|
— | — | — | — |
No JSON data available for plots.