Hg_chrom1_TN10mRNA_1775
Organism: Heterodera glycines Gene Locus: chr1:15457419-15458890 Feature type: polypeptideProtein Sequence
Length: 215
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 0.865 | 1.099 | 0.962 | 1.163 | 1.67 | 0.941 | 1.628 | 0.62 | 0.943 | 0.846 | 2.462 | 1.938 | 1.431 | 0.949 | 1.063 | 0.305 | 0.493 | 0.0 | 0.821 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1704
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKFHLTRAEEPRRRKRSV
|
— | — | — | — |
1-19
|
0.807
|
1.000
|
0.000
|
0.000
|
0.306
|
0.303
|
0.095
|
0.199
|
0.187
|
0.019
|
0.107
|
0.009
|
0.043
|
0.732
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006355
|
1.000
|
1.000
|
Hsc_gene_12816.t1
|
Hsc_gene_12816.t1
|
— |
Q59E04.1 Neuroendocrine protein 7B2 [Drosophila melanogaster]
|
KAI1724024.1 neuroendocrine protein 7B2 precursor (Secretogranin v) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007218|GO:0030141
|
GO:0003674_0.729|GO:0005488_0.705|GO:0008150_0.664|GO:0005515_0.661|GO:0065007_0.625|GO:0050789_0.612|GO:0005575_0.597|GO:0110165_0.595|GO:0005622_0.533|GO:0008152_0.519|GO:0016020_0.512|GO:0043170_0.512|GO:0044238_0.508
|
IPR007945+44-209_58-211+
|
— |
PF05281+44-209+Neuroendocrine_protein_7B2_precursor_(Secretogranin_V)
|
— |
PTHR12738+58-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
212-215
|
1.000
|
1-211
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
23945.980
|
5.878
|
-2.500
|
26.512
|
13.023
|
46.047
|
53.953
|
13.488
|
13.023
|
49.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
violet
|
4552.892
|
4162.378
|
18794.943
|
10182.383
|
2152.631
|
910.563
|
392.057
|
8589.211
|
1524.397
|
1831.544
|
1699.910
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.947
|
1.153
|
-0.777
|
-2.274
|
-1.227
|
-1.206
|
3.138
|
-4.313
|
— | — | — | — | — |