SCN Proteipedia

Hg_chrom1_TN10mRNA_1776

Organism: Heterodera glycines Gene Locus: chr1:15459310-15464476 Feature type: polypeptide

Protein Sequence

Length: 1,133

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.924	0.944	0.979	0.913	1.089	0.883	0.757	0.971	1.353	1.288	1.003	1.765	1.275	0.883	1.441	0.845	0.651	0.976	0.543	0.935	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1705	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRAKAELKK,RKVFTRFENSSKLRKN,KRHVSVASHNQSLTKRPKV	—	—	—	—	—	—	0.000	—	—	0.863	0.203	0.051	0.297	0.030	0.049	0.044	0.004	0.057	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006356	1.000	1.000	Hsc_gene_12817.t1	Hsc_gene_12817.t1	—	P90829.1 DNA polymerase delta catalytic subunit [Caenorhabditis elegans]	KAF7630005.1 Kinesin motor domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0003676\|GO:0003677\|GO:0003887	GO:0008150_0.943\|GO:0009987_0.886\|GO:0005575_0.801\|GO:0110165_0.786\|GO:0008152_0.767\|GO:0044238_0.750\|GO:0003674_0.745\|GO:0043170_0.722\|GO:0044237_0.721\|GO:0009058_0.716\|GO:0044249_0.697\|GO:0006139_0.685\|GO:0005622_0.681\|GO:0016020_0.679\|GO:0009059_0.677\|GO:0090304_0.670\|GO:0034654_0.654\|GO:0006259_0.648\|GO:0141187_0.647\|GO:0043226_0.637\|GO:0071897_0.628\|GO:0003824_0.626\|GO:0043229_0.609\|GO:0043227_0.575\|GO:0043231_0.564	IPR006133+245-483+\|IPR006134+548-992+\|IPR006172+313-784_609-622_706-718_770-778+\|IPR012337+99-551+\|IPR017964+772-780+\|IPR023211+592-829+\|IPR025687+1031-1105+\|IPR036397+314-533+\|IPR042087+846-1004+\|IPR043502+587-1000+\|IPR050240+83-1100+	SM00486+313-784+	PF00136+548-992+DNA_polymerase_family_B\|PF03104+245-483+DNA_polymerase_family_B,_exonuclease_domain\|PF14260+1031-1105+C4-type_zinc-finger_of_DNA_polymerase_delta	G3DSA:1.10.132.60:FF:000001+846-1004+DNA_polymerase\|G3DSA:1.10.287.690:FF:000001+670-722+DNA_polymerase\|G3DSA:3.30.420.10:FF:000004+314-533+DNA_polymerase	PTHR10322+83-1100+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-91	1.000	92-1133	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.759	127740.700	8.645	31.000	27.538	10.415	44.925	55.075	15.622	11.915	47.308

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	darkorange	1554.923	2825.982	1907.840	2213.863	2414.436	1593.450	2017.022	1143.194	815.625	897.650	862.496

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.797	-0.489	0.324	0.093	-0.585	0.350	-0.584	0.961	—	—	—	—	—

No JSON data available for plots.

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