Hg_chrom1_TN10mRNA_1777
Organism: Heterodera glycines Gene Locus: chr1:15464731-15465769 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.137 | 1.24 | 0.97 | 0.46 | 1.111 | 0.684 | 0.635 | 1.111 | 1.086 | 1.021 | 1.077 | 1.83 | 0.494 | 0.598 | 1.542 | 1.079 | 0.729 | 1.684 | 1.026 | 0.523 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1706
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.539
|
0.272
|
0.054
|
0.510
|
0.094
|
0.115
|
0.099
|
0.098
|
0.123
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006357
|
1.000
|
1.000
|
Hsc_gene_12818.t1
|
Hsc_gene_12818.t1
|
— |
P97461.4 Small ribosomal subunit protein uS7 [Mus musculus]
|
KAI3422536.1 ribosomal protein S5 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0006412|GO:0015935
|
GO:0005575_0.846|GO:0110165_0.843|GO:0005622_0.757|GO:0005737_0.677|GO:0043226_0.654|GO:0043229_0.653|GO:0003674_0.572|GO:0016020_0.565|GO:0005829_0.517
|
IPR000235+4-225_29-225+|IPR005716+37-225_39-225+|IPR020606+91-117+|IPR023798+82-225+|IPR036823+21-225_38-225+
|
— |
PF00177+82-225+Ribosomal_protein_S7p/S5e
|
G3DSA:1.10.455.10:FF:000002+24-225+40S_ribosomal_protein_S5
|
PTHR11205+29-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-17;225-225
|
1.000
|
18-224
|
9cpa_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
24959.670
|
9.667
|
8.500
|
28.889
|
7.111
|
48.889
|
51.111
|
16.889
|
12.000
|
53.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
10163.668
|
5018.683
|
7230.101
|
12403.882
|
12323.161
|
9368.806
|
6322.825
|
3463.504
|
17919.471
|
9977.335
|
13381.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.298
|
1.168
|
0.887
|
— |
-0.380
|
-0.557
|
-1.544
|
1.012
|
— | — | — | — | — |
No JSON data available for plots.