Hg_chrom1_TN10mRNA_1779
Organism: Heterodera glycines Gene Locus: chr1:15470212-15474006 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 1.581 | 0.876 | 0.391 | 0.897 | 0.363 | 0.708 | 1.558 | 1.07 | 1.378 | 1.245 | 1.333 | 1.495 | 1.144 | 1.561 | 0.688 | 0.929 | 0.558 | 1.09 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1708
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKPDRTDKLARHRPFRR,RKEIAQLLLENGAKVRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.239
|
0.067
|
0.345
|
0.134
|
0.079
|
0.062
|
0.013
|
0.258
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003091
|
1.000
|
2.000
|
Hsc_gene_12820.t1;Hsc_gene_12820.t2
|
Hsc_gene_12820.t3
|
— |
Q28C34.1 Ankyrin repeat domain-containing protein 13C [Xenopus tropicalis]
|
XP_026683936.1 ankyrin repeat domain-containing protein 13C-like [Diaphorina citri]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.859|GO:0005575_0.801|GO:0110165_0.773|GO:0003674_0.747|GO:0009987_0.720|GO:0016020_0.700|GO:0005622_0.668|GO:0065007_0.662|GO:0050789_0.648|GO:0043226_0.635|GO:0005488_0.610|GO:0050794_0.596|GO:0043229_0.595|GO:0043227_0.584|GO:0043231_0.546
|
IPR002110+5-79_30-59_30-62_31-46_278-349_303-332_303-335_319-333+|IPR021832+196-261_271-349+|IPR036770+3-80_4-349_261-352+
|
SM00248+30-59_303-332+
|
PF11904+196-261+GPCR-chaperone|PF12796+5-79_278-349+Ankyrin_repeats_(3_copies)
|
— |
PTHR12447+271-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
95-141
|
2.000
|
1-94;142-353
|
4hll_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.755
|
39860.920
|
10.543
|
25.500
|
29.178
|
11.615
|
47.875
|
52.125
|
18.980
|
10.198
|
48.442
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
178.746
|
107.925
|
64.142
|
54.971
|
54.907
|
55.742
|
32.057
|
43.462
|
183.961
|
489.090
|
358.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.978
|
-1.110
|
— | — | — |
-0.786
|
— | — | — | — |
-3.066
|
— | — |
No JSON data available for plots.