Hg_chrom1_TN10mRNA_1782
Organism: Heterodera glycines Gene Locus: chr1:15483576-15485694 Feature type: polypeptideProtein Sequence
Length: 342
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.19 | 0.952 | 1.01 | 0.907 | 1.121 | 1.499 | 0.696 | 1.023 | 0.78 | 1.343 | 0.753 | 0.86 | 0.893 | 0.675 | 1.432 | 1.378 | 0.671 | 0.93 | 0.675 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1711
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
12-32
|
0.996
|
— | — |
0.000
|
— | — |
0.838
|
0.391
|
0.023
|
0.413
|
0.023
|
0.016
|
0.084
|
0.016
|
0.009
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006360
|
1.000
|
1.000
|
Hsc_gene_12824.t1
|
— | — | — |
KAH7729787.1 tRNA-splicing endonuclease subunit SEN2 [Aphelenchus avenae]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000213|GO:0003676|GO:0006388
|
GO:0005575_0.907|GO:0110165_0.899|GO:0005622_0.843|GO:0005737_0.763|GO:0008150_0.743|GO:0009987_0.699|GO:0016020_0.657|GO:0043226_0.606|GO:0043229_0.594|GO:0043227_0.570|GO:0008152_0.568|GO:0043170_0.565|GO:0044238_0.562|GO:0044237_0.557|GO:0043231_0.552|GO:0009058_0.547|GO:0044249_0.538|GO:0009059_0.535|GO:0010467_0.524|GO:0006139_0.522|GO:0034654_0.510|GO:0090304_0.508|GO:0141187_0.502
|
IPR006676+29-330+|IPR006677+220-295+|IPR011856+217-309+|IPR036167+217-295+
|
— |
PF01974+220-295+tRNA_intron_endonuclease,_catalytic_C-terminal_domain
|
— |
PTHR21227+29-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;97-152
|
2.000
|
4-96;153-342
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.706
|
37822.610
|
7.049
|
2.500
|
26.316
|
8.772
|
50.000
|
50.000
|
14.035
|
12.281
|
51.754
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
639.123
|
610.952
|
579.149
|
484.315
|
542.308
|
514.069
|
689.596
|
651.827
|
1053.501
|
478.956
|
725.189
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.306
|
-0.472
|
-0.150
|
0.131
|
— |
0.434
|
— | — | — | — | — | — | — |
No JSON data available for plots.