Hg_chrom1_TN10mRNA_1783
Organism: Heterodera glycines Gene Locus: chr1:15485955-15487684 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.59 | 1.554 | 0.589 | 0.641 | 1.096 | 0.712 | 1.496 | 0.855 | 0.982 | 0.842 | 2.765 | 0.712 | 1.479 | 1.483 | 0.794 | 0.35 | 0.777 | 3.616 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1712
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.189
|
0.630
|
0.152
|
0.325
|
0.571
|
0.255
|
0.277
|
0.129
|
0.098
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006361
|
1.000
|
1.000
|
Hsc_gene_12825.t1
|
Hsc_gene_12825.t1
|
— |
P53703.1 Probable holocytochrome-c-type synthase [Caenorhabditis elegans]
|
KAH7730055.1 Protein CCHL-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004408|GO:0005739
|
GO:0005575_0.782|GO:0110165_0.778|GO:0005622_0.752|GO:0005737_0.694|GO:0016020_0.694|GO:0043226_0.689|GO:0043229_0.674|GO:0043227_0.658|GO:0043231_0.653|GO:0008150_0.518|GO:0005739_0.504
|
IPR000511+13-216_21-211_105-120+
|
— |
PF01265+21-211+Cytochrome_c/c1_heme_lyase
|
— |
PTHR12743+13-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58
|
1.000
|
59-234
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
27089.730
|
7.786
|
4.500
|
28.205
|
12.821
|
47.009
|
52.991
|
15.812
|
12.393
|
50.427
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1574.301
|
5658.566
|
1344.146
|
1381.407
|
1397.732
|
1250.110
|
1162.614
|
1195.021
|
1019.786
|
1101.630
|
1066.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.303
|
-2.171
|
0.148
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.