SCN Proteipedia

Hg_chrom1_TN10mRNA_1784

Organism: Heterodera glycines Gene Locus: chr1:15489367-15491379 Feature type: polypeptide

Protein Sequence

Length: 306

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.95	0.684	1.07	0.563	1.58	0.838	1.012	0.49	0.799	1.104	1.089	0.769	0.454	0.943	1.534	0.887	1.179	1.386	0.754	0.384	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1713	—	—	1.000	1.000	1.000	1.000	1.000	1.000	2.000	1.000	—	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.896	0.141	0.011	0.356	0.023	0.010	0.064	0.004	0.008	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006362	1.000	1.000	Hsc_gene_12826.t1	Hsc_gene_12826.t1	—	Q90X38.2 G-patch domain and KOW motifs-containing protein [Danio rerio]	KAF7630008.1 G-patch_2 domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398	GO:0008150_0.911\|GO:0005575_0.910\|GO:0110165_0.907\|GO:0009987_0.854\|GO:0003674_0.851\|GO:0005622_0.834\|GO:0005488_0.803\|GO:0016020_0.800\|GO:0043226_0.772\|GO:0008152_0.764\|GO:0044238_0.758\|GO:0044237_0.753\|GO:0043229_0.752\|GO:0009058_0.750\|GO:0043170_0.744\|GO:0044249_0.733\|GO:0009059_0.731\|GO:0010467_0.731\|GO:0006139_0.724\|GO:0043227_0.721\|GO:0034654_0.713\|GO:0090304_0.708\|GO:0016070_0.705\|GO:0032774_0.704\|GO:0141187_0.704\|GO:0097159_0.701\|GO:0003676_0.695\|GO:0003723_0.695\|GO:0043231_0.689\|GO:0006396_0.686\|GO:0016071_0.681\|GO:0006397_0.678\|GO:0000375_0.677\|GO:0000377_0.677\|GO:0000398_0.677\|GO:0008380_0.677\|GO:0032991_0.660\|GO:0005634_0.627\|GO:0031974_0.604\|GO:0043233_0.604\|GO:0070013_0.603\|GO:0031981_0.592\|GO:0005654_0.571\|GO:1990904_0.563\|GO:0140513_0.556\|GO:0005681_0.540	IPR026822+141-195+\|IPR045166+2-289+	—	PF12656+141-195+G-patch_domain	—	PTHR15818+2-289+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-59;282-306	1.000	60-281	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.665	33398.780	6.301	-0.500	31.046	4.902	50.654	49.346	15.686	15.359	54.575

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	6906.761	17642.511	13101.274	4064.662	2340.440	2059.744	3416.512	8471.070	11408.718	2499.463	6317.715

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.658	-2.255	-1.580	-0.828	-0.170	0.742	1.934	-1.166	2.071	-1.322	—	—	—

No JSON data available for plots.

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