Hg_chrom1_TN10mRNA_1785
Organism: Heterodera glycines Gene Locus: chr1:15491414-15493412 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 1.03 | 0.307 | 1.018 | 0.457 | 0.92 | 0.427 | 1.055 | 0.844 | 1.967 | 0.607 | 0.745 | 2.227 | 1.136 | 1.55 | 1.266 | 0.934 | 0.927 | 1.947 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1714
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
peroxisome
|
— | — |
64-84
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.065
|
0.582
|
0.630
|
0.179
|
0.113
|
0.191
|
0.048
|
0.802
|
0.143
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006363
|
1.000
|
1.000
|
Hsc_gene_12827.t1
|
Hsc_gene_12827.t1
|
— | — |
KAI1728772.1 transmembrane protein like protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0009987_0.924|GO:0005575_0.919|GO:0110165_0.919|GO:0005622_0.807|GO:0043226_0.787|GO:0043229_0.775|GO:0005737_0.743|GO:0065007_0.682|GO:0050789_0.666|GO:0016020_0.664|GO:0050794_0.653|GO:0050896_0.624|GO:0032501_0.622|GO:0008152_0.567|GO:0009058_0.560|GO:0044237_0.556|GO:0042221_0.540|GO:0043227_0.534|GO:0019222_0.531|GO:0006950_0.529|GO:0031323_0.524|GO:0043231_0.512|GO:0009628_0.507
|
IPR026749+24-206+|IPR031926+21-153+
|
— |
PF15982+21-153+N-terminal_cysteine-rich_region_of_Transmembrane_protein_135
|
— |
PTHR12459+24-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
54134.560
|
10.732
|
39.000
|
18.143
|
15.190
|
40.717
|
59.283
|
13.713
|
4.430
|
47.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
1276.784
|
1154.917
|
1184.743
|
1194.849
|
1320.817
|
1096.304
|
2118.487
|
1565.302
|
328.202
|
1726.498
|
1127.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.194
|
-0.088
|
0.122
|
0.113
|
-0.254
|
0.960
|
0.407
|
0.580
|
-2.519
|
— | — | — | — |
No JSON data available for plots.