Hg_chrom1_TN10mRNA_1786
Organism: Heterodera glycines Gene Locus: chr1:15493696-15494430 Feature type: polypeptideProtein Sequence
Length: 150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 0.62 | 0.606 | 0.46 | 1.0 | 1.026 | 0.714 | 0.667 | 1.037 | 1.441 | 0.808 | 1.569 | 1.296 | 0.0 | 2.857 | 1.238 | 1.53 | 0.808 | 1.538 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1715
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— |
KRKNVGGGSATATERERRL,RKNVGGGSATATERERRLR
|
23-46
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.081
|
0.163
|
0.057
|
0.125
|
0.765
|
0.721
|
0.742
|
0.059
|
0.172
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006364
|
1.000
|
1.000
|
Hsc_gene_12828.t1
|
Hsc_gene_12828.t1
|
— |
Q8VHI8.1 Vesicle transport protein SEC20 [Rattus norvegicus]
|
KAI1727736.1 sec20 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005484|GO:0006890
|
GO:0005575_0.950|GO:0110165_0.947|GO:0008150_0.932|GO:0016020_0.921|GO:0005622_0.863|GO:0043226_0.858|GO:0043229_0.841|GO:0043227_0.819|GO:0043231_0.815|GO:0050896_0.794|GO:0005737_0.793|GO:0032991_0.654|GO:0098796_0.592|GO:0009987_0.558|GO:0005886_0.557|GO:0071944_0.557|GO:0031201_0.540|GO:0065007_0.512|GO:0050789_0.503
|
IPR005606+18-143_49-137+
|
— |
PF03908+49-137+Sec20
|
— |
PTHR12825+18-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
17558.250
|
11.438
|
16.000
|
30.000
|
10.667
|
54.667
|
45.333
|
20.667
|
9.333
|
42.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
508.573
|
454.204
|
481.092
|
396.772
|
453.318
|
486.438
|
563.105
|
525.072
|
584.285
|
526.793
|
551.433
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.148
|
-0.332
|
— | — | — |
0.221
|
— | — | — | — | — | — | — |
No JSON data available for plots.