Hg_chrom1_TN10mRNA_1788
Organism: Heterodera glycines Gene Locus: chr1:15496689-15499582 Feature type: polypeptideProtein Sequence
Length: 571
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.039 | 0.815 | 0.573 | 0.664 | 0.671 | 1.212 | 0.876 | 1.226 | 1.362 | 1.751 | 0.292 | 1.339 | 1.654 | 0.909 | 1.072 | 1.351 | 0.66 | 1.035 | 1.347 | 0.773 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1717
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.120
|
0.160
|
0.029
|
0.143
|
0.341
|
0.627
|
0.372
|
0.072
|
0.610
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006366
|
1.000
|
1.000
|
Hsc_gene_12830.t1
|
Hsc_gene_12830.t1;Hsc_gene_12831.t1
|
— |
Q6NUT3.2 Major facilitator superfamily domain-containing protein 12 [Homo sapiens]
|
KAI1721777.1 MFS/sugar transport protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008643|GO:0015293|GO:0016020
|
GO:0008150_0.955|GO:0008152_0.707|GO:0065007_0.648|GO:0042440_0.644|GO:0043473_0.644|GO:0043474_0.644|GO:0050789_0.631|GO:0009058_0.535|GO:0005575_0.521|GO:0110165_0.514|GO:0019222_0.508
|
IPR036259+50-263_51-506_291-500+|IPR039672+49-497+
|
— |
PF13347+67-442+MFS/sugar_transport_protein
|
G3DSA:1.20.1250.20:FF:000431+56-267+Predicted_protein
|
PTHR11328+49-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
506-571
|
1.000
|
1-505
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
62841.730
|
7.453
|
7.000
|
16.813
|
12.785
|
38.529
|
61.471
|
9.632
|
7.180
|
49.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
995.469
|
1089.593
|
1568.258
|
1293.622
|
1196.946
|
1086.403
|
1571.813
|
1242.713
|
720.545
|
421.262
|
549.526
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.295
|
0.111
|
-0.168
|
-0.144
|
— |
0.544
|
— |
0.483
|
— | — | — | — | — |
No JSON data available for plots.