Hg_chrom1_TN10mRNA_1789
Organism: Heterodera glycines Gene Locus: chr1:15499692-15502745 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.337 | 0.94 | 0.793 | 1.054 | 1.326 | 0.479 | 1.437 | 1.788 | 1.01 | 1.132 | 2.028 | 0.798 | 1.105 | 0.821 | 0.657 | 0.942 | 1.132 | 1.768 | 0.338 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1718
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.531
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.353
|
0.262
|
0.066
|
0.621
|
0.116
|
0.085
|
0.085
|
0.019
|
0.100
|
0.207
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006367
|
1.000
|
1.000
|
Hsc_gene_12832.t1
|
Hsc_gene_12832.t1
|
— |
Q93341.1 Putative dihydrofolate reductase [Caenorhabditis elegans]
|
KAF7640258.1 DHFR domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004146|GO:0046654|GO:0050661
|
GO:0003674_0.841|GO:0005575_0.760|GO:0110165_0.754|GO:0008150_0.744|GO:0003824_0.719|GO:0005622_0.719|GO:0016491_0.667|GO:0005737_0.654|GO:0004146_0.650|GO:0016645_0.650|GO:0016646_0.650|GO:0009987_0.631|GO:0008152_0.630|GO:0016020_0.555|GO:0044237_0.547|GO:0009058_0.538|GO:0043226_0.538|GO:0043229_0.525
|
IPR001796+61-174_62-170_63-160+|IPR012259+62-170+|IPR017925+73-95+|IPR024072+43-163_59-172+
|
— |
PF00186+63-160+Dihydrofolate_reductase
|
— |
PTHR48069+62-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
9mlt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.623
|
19637.720
|
7.326
|
2.500
|
25.862
|
9.195
|
47.126
|
52.874
|
14.368
|
11.494
|
48.851
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
2006.162
|
1057.226
|
1539.512
|
1019.294
|
1013.878
|
895.774
|
949.709
|
1657.312
|
2965.148
|
3503.335
|
3272.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.312
|
-0.190
|
-0.486
|
— |
-0.164
|
— |
0.782
|
-0.660
|
— | — | — | — | — |
No JSON data available for plots.