Hg_chrom1_TN10mRNA_179
Organism: Heterodera glycines Gene Locus: chr1:1279063-1282271 Feature type: polypeptideProtein Sequence
Length: 265
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 0.878 | 0.686 | 0.52 | 1.069 | 1.451 | 0.943 | 0.377 | 0.671 | 1.326 | 0.8 | 1.11 | 0.839 | 1.524 | 1.463 | 1.402 | 0.99 | 0.858 | 0.0 | 0.666 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_174
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,KRPLDLGQDGSLVDVKRPR
|
— | — |
35-56
|
1.000
|
— | — |
0.000
|
— | — |
0.921
|
0.114
|
0.004
|
0.359
|
0.015
|
0.060
|
0.043
|
0.021
|
0.061
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005596
|
1.000
|
1.000
|
Hsc_gene_20349.t1
|
Hsc_gene_20349.t1
|
— |
Q966L3.1 Akirin [Caenorhabditis elegans]
|
KAH7723696.1 Protein E01A2.6 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.873|GO:0009987_0.834|GO:0005575_0.770|GO:0110165_0.767|GO:0005622_0.737|GO:0016020_0.703|GO:0043226_0.699|GO:0043229_0.685|GO:0043227_0.639|GO:0043231_0.619|GO:0005634_0.551|GO:0065007_0.550|GO:0050789_0.535|GO:0050794_0.529
|
IPR024132+1-253+
|
— | — | — |
PTHR13293+1-253+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-195
|
1.000
|
196-265
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.947
|
28705.530
|
9.379
|
7.000
|
23.396
|
6.038
|
48.679
|
51.321
|
13.208
|
10.189
|
54.717
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1930.921
|
779.611
|
1023.700
|
1542.169
|
1752.503
|
1962.686
|
2422.278
|
1747.708
|
1972.647
|
2756.800
|
2420.735
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.165
|
0.847
|
0.699
|
0.153
|
0.179
|
0.314
|
-0.272
|
0.613
|
— | — | — | — | — |
No JSON data available for plots.