Hg_chrom1_TN10mRNA_1797
Organism: Heterodera glycines Gene Locus: chr1:15536280-15539951 Feature type: polypeptideProtein Sequence
Length: 695
(Signal peptide: 1-12)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.602 | 1.004 | 0.576 | 0.447 | 2.11 | 1.771 | 0.805 | 0.935 | 1.471 | 1.089 | 1.635 | 1.693 | 0.999 | 0.304 | 1.351 | 0.946 | 0.755 | 0.545 | 0.664 | 0.592 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1724
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
15-Not_Clustered
|
0.494
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KREAEQMPLKVNELAKLKK,KERKKREKMEKRAAKRLGRILGMLSGKKGGGGGSQSGRSGGG
|
— | — | — | — |
1-12
|
0.943
|
0.795
|
0.000
|
0.000
|
0.340
|
0.147
|
0.016
|
0.655
|
0.116
|
0.249
|
0.380
|
0.043
|
0.307
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000288
|
1.000
|
8.000
|
Hsc_gene_12839.t1;Hsc_gene_12840.t1;Hsc_gene_12841.t1;Hsc_gene_12841.t2;Hsc_gene_12843.t1;Hsc_gene_12844.t1;Hsc_gene_12845.t1;Hsc_gene_12845.t2
|
Hsc_gene_12838.t1;Hsc_gene_12842.t1;Hsc_gene_12845.t1
|
— | — | — |
WP_278847777
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
265-375;432-518
|
3.000
|
1-264;376-431;519-695
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
80269.390
|
9.111
|
17.500
|
35.108
|
8.345
|
57.554
|
42.446
|
19.281
|
15.827
|
37.122
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
318.597
|
72.499
|
84.551
|
132.897
|
65.080
|
66.830
|
60.238
|
301.715
|
775.099
|
518.608
|
628.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.736
|
0.762
|
-1.065
|
— | — |
2.066
|
-2.183
|
— |
-2.431
|
— | — | — |