Hg_chrom1_TN10mRNA_1800
Organism: Heterodera glycines Gene Locus: chr1:15545992-15547646 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.288 | 0.724 | 0.629 | 0.239 | 0.807 | 0.976 | 1.112 | 0.519 | 1.615 | 1.216 | 0.524 | 1.628 | 0.961 | 0.732 | 1.977 | 1.483 | 0.681 | 1.049 | 1.065 | 0.102 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1727
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.569
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|peroxisomal_targeting_signal
|
extracellular
|
— | — |
18-41
|
0.967
|
4-42
|
0.998
|
— | — |
0.000
|
— | — |
0.365
|
0.100
|
0.621
|
0.417
|
0.051
|
0.217
|
0.493
|
0.370
|
0.092
|
0.962
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003093
|
2.000
|
1.000
|
Hsc_gene_12848.t1
|
Hsc_gene_12848.t1
|
— |
Q9PKF7.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG [Chlamydia muridarum str. Nigg]
|
KAI1705975.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.747|GO:0008150_0.735|GO:0005575_0.663|GO:0110165_0.654|GO:0008152_0.550|GO:0003824_0.533
|
IPR002347+47-64_124-135_166-182_191-210_212-229_249-269+|IPR036291+45-286+
|
— |
PF13561+57-287+Enoyl-(Acyl_carrier_protein)_reductase
|
— |
PTHR43975+42-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
31124.880
|
11.400
|
15.500
|
22.491
|
6.228
|
43.945
|
56.055
|
14.187
|
8.304
|
52.941
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
408.404
|
629.519
|
796.194
|
492.600
|
346.497
|
484.016
|
277.686
|
494.274
|
31.331
|
442.972
|
266.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.491
|
-0.584
|
-0.541
|
0.498
|
-0.791
|
— |
-0.688
|
— | — | — | — | — |
No JSON data available for plots.