Hg_chrom1_TN10mRNA_1801
Organism: Heterodera glycines Gene Locus: chr1:15546049-15547572 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.366 | 1.327 | 0.61 | 0.231 | 0.783 | 1.205 | 1.159 | 0.671 | 1.417 | 1.179 | 0.508 | 1.184 | 0.932 | 0.71 | 1.438 | 1.822 | 0.66 | 0.814 | 0.774 | 0.099 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1727
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.569
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
32-52
|
0.995
|
— | — |
0.000
|
— | — |
0.399
|
0.098
|
0.017
|
0.573
|
0.049
|
0.256
|
0.121
|
0.053
|
0.226
|
0.404
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003093
|
2.000
|
1.000
|
Hsc_gene_12848.t1
|
Hsc_gene_12848.t1
|
— |
Q9PKF7.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG [Chlamydia muridarum str. Nigg]
|
KAI1705975.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.833|GO:0008150_0.747|GO:0005575_0.601|GO:0110165_0.597|GO:0003824_0.577|GO:0016491_0.542|GO:0009987_0.540|GO:0008152_0.518|GO:0016020_0.513|GO:0005622_0.503
|
IPR002347+108-125_175-191_200-219_221-238_258-278+|IPR036291+62-295+
|
— |
PF13561+66-296+Enoyl-(Acyl_carrier_protein)_reductase
|
— |
PTHR43975+66-295+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-58
|
1.000
|
59-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
31418.440
|
10.460
|
9.000
|
19.799
|
6.040
|
46.980
|
53.020
|
11.745
|
8.054
|
57.047
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
408.404
|
629.519
|
796.194
|
492.600
|
346.497
|
484.016
|
277.686
|
494.274
|
31.331
|
442.972
|
266.554
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.491
|
-0.584
|
-0.541
|
0.498
|
-0.791
|
— |
-0.688
|
— | — | — | — | — |
No JSON data available for plots.