Hg_chrom1_TN10mRNA_1808
Organism: Heterodera glycines Gene Locus: chr1:15572190-15574460 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.421 | 0.861 | 0.606 | 0.128 | 1.852 | 2.184 | 0.705 | 0.556 | 0.741 | 1.652 | 1.066 | 1.961 | 1.235 | 0.499 | 1.436 | 0.794 | 0.85 | 0.281 | 0.0 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1734
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole|golgi_apparatus
|
— |
KRFLEGEMRNIQRERRV,KKRLDLDAAKSRLKRART,RRVLQKKRLDLDAAKSRLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.186
|
0.345
|
0.035
|
0.465
|
0.196
|
0.601
|
0.688
|
0.034
|
0.223
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006375
|
1.000
|
1.000
|
Hsc_gene_12855.t1
|
Hsc_gene_12855.t1;Hsc_gene_12855.t2
|
— |
Q5ZIR1.1 Endophilin-B1 [Gallus gallus]
|
KAI6230635.1 Endophilin-B1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005737
|
GO:0005575_0.926|GO:0110165_0.918|GO:0008150_0.847|GO:0005622_0.843|GO:0009987_0.813|GO:0016020_0.765|GO:0065007_0.712|GO:0005737_0.710|GO:0043226_0.674|GO:0043229_0.661|GO:0051179_0.648|GO:0016043_0.635|GO:0071840_0.635|GO:0051234_0.629|GO:0050789_0.600|GO:0043227_0.586|GO:0003674_0.575|GO:0005488_0.575|GO:0050794_0.575|GO:0051641_0.568|GO:0043231_0.553|GO:0005515_0.516|GO:0006996_0.508
|
IPR004148+7-253_16-251_24-260+|IPR027267+17-252_24-261+
|
SM00721+7-253+
|
PF03114+16-251+BAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
252-270
|
1.000
|
1-251
|
9g2w_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
30277.380
|
6.745
|
0.500
|
29.630
|
6.667
|
52.593
|
47.407
|
15.185
|
14.444
|
40.741
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
steelblue
|
1332.184
|
1206.358
|
1517.777
|
1370.753
|
1466.673
|
1745.494
|
1729.817
|
3002.992
|
643.408
|
830.797
|
750.487
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.266
|
— |
0.677
|
-0.651
|
— | — | — | — | — |
No JSON data available for plots.