Hg_chrom1_TN10mRNA_181
Organism: Heterodera glycines Gene Locus: chr1:1291343-1292727 Feature type: polypeptideProtein Sequence
Length: 153
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.456 | 1.824 | 0.357 | 0.676 | 0.545 | 1.341 | 0.7 | 1.961 | 1.017 | 1.855 | 0.594 | 1.153 | 1.816 | 1.131 | 1.867 | 0.84 | 0.536 | 1.287 | 1.006 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_176
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.382
|
0.515
|
0.026
|
0.487
|
0.067
|
0.047
|
0.086
|
0.093
|
0.106
|
0.244
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q5ZL98.1 DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
|
KAI6216279.1 DNA-directed RNA polymerase subunit [Aphelenchoides besseyi]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.912|GO:0005622_0.827|GO:0043226_0.789|GO:0043229_0.783|GO:0008150_0.712|GO:0016020_0.663|GO:0009987_0.659|GO:0005737_0.590|GO:0043227_0.575|GO:0043231_0.559|GO:0008152_0.534|GO:0043170_0.534|GO:0044238_0.525|GO:0009058_0.523|GO:0044237_0.521|GO:0009059_0.517|GO:0044249_0.517|GO:0010467_0.508
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-153
|
9lxo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
17615.610
|
11.459
|
15.000
|
22.222
|
13.072
|
44.444
|
55.556
|
16.993
|
5.229
|
45.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
598.209
|
507.203
|
606.066
|
391.432
|
313.716
|
259.617
|
338.074
|
484.052
|
927.375
|
834.073
|
874.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.511
|
-0.522
|
-0.351
|
— |
0.392
|
0.794
|
-0.374
|
— | — | — | — | — |
No JSON data available for plots.