SCN Proteipedia

Hg_chrom1_TN10mRNA_1810

Organism: Heterodera glycines Gene Locus: chr1:15577089-15586979 Feature type: polypeptide

Protein Sequence

Length: 1,799

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.963	1.086	0.97	0.403	1.38	1.411	0.695	1.695	0.729	1.074	0.573	1.079	1.081	0.919	1.792	1.263	0.866	0.783	1.112	0.736	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1736	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRP,RHRR,RRRR,RRKRR,KRKKRNNAVGRKKGT,GRKRSARAAAAAPPRQHR,RKKGTAAERRPQRRKRPRL,RKLSAEEHDRANSHRRIHR	—	—	9-36	0.999	—	—	0.000	—	—	0.961	0.048	0.020	0.174	0.030	0.013	0.008	0.017	0.053	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006377	1.000	1.000	Hsc_gene_12857.t1	Hsc_gene_12857.t1	—	Q921C3.2 Bromodomain and WD repeat-containing protein 1 [Mus musculus]	KAI1718733.1 bromodomain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.972\|GO:0009987_0.940\|GO:0005575_0.860\|GO:0110165_0.860\|GO:0065007_0.812\|GO:0050789_0.797\|GO:0005622_0.793\|GO:0016020_0.756\|GO:0043226_0.728\|GO:0043229_0.693\|GO:0043227_0.646\|GO:0071840_0.616\|GO:0043231_0.595\|GO:0050794_0.595\|GO:0008152_0.591\|GO:0043170_0.591\|GO:0016043_0.587\|GO:0044238_0.579\|GO:0044237_0.548\|GO:0005634_0.547\|GO:0009058_0.544\|GO:0009059_0.532\|GO:0044249_0.532\|GO:0010467_0.527	IPR001487+1427-1534_1435-1515_1442-1512_1445-1458_1459-1475_1475-1493_1493-1512+\|IPR001680+198-237_205-237_240-279_244-278_247-288_282-324_380-419_384-419_387-421_472-510_513-553_514-553_520-562+\|IPR015943+186-334_335-473_474-649+\|IPR019775+540-554+\|IPR020472+224-238_266-280_406-420+\|IPR036322+197-604+\|IPR036427+1408-1533_1413-1534+\|IPR052060+40-1698+	SM00297+1427-1534+\|SM00320+198-237_240-279_282-324_380-419_472-510_513-553+	PF00400+205-237_244-278_384-419_514-553+WD_domain,_G-beta_repeat\|PF00439+1435-1515+Bromodomain	—	PTHR16266+40-1698+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	423-476;710-1189;1713-1799	3.000	1-422;477-709;1190-1712	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.692	203776.730	6.835	11.500	29.572	11.228	53.863	46.137	15.953	13.619	49.361

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	2219.415	5705.575	2066.723	1905.384	2728.826	2177.135	2848.616	1443.396	1943.813	1173.709	1503.754

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.696	-1.720	—	0.487	-0.311	0.398	-0.699	1.123	—	—	—	—	—

No JSON data available for plots.

Back to Browser