Hg_chrom1_TN10mRNA_1812
Organism: Heterodera glycines Gene Locus: chr1:15611987-15617683 Feature type: polypeptideProtein Sequence
Length: 920
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 0.708 | 1.344 | 0.0 | 2.373 | 0.948 | 1.022 | 1.141 | 0.58 | 0.955 | 1.812 | 1.407 | 0.725 | 0.564 | 1.375 | 0.73 | 1.105 | 0.527 | 0.334 | 0.448 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRIR,RKKK,RKRKH,RKKQRDVYTKVLKAKRT,RRPKKKGGKSTRKRKALK,RKLEEGKLKHLESKRFSK,RKRKKELDFDTTQELKKKR,KRKKELDFDTTQELKKKRD,RKKELDFDTTQELKKKRDD,KKKRDDDDEFGNQTHRRHR,KKRDDDDEFGNQTHRRHRS,KRDDDDEFGNQTHRRHRSR,RRHRSRSPKKSSRHKKHRD,KKMNSMDTPLGTLNKQLKK,FHGKGPGKKQAEKHAAKVVKREKLKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.886
|
0.038
|
0.010
|
0.209
|
0.055
|
0.034
|
0.083
|
0.004
|
0.027
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006378
|
1.000
|
1.000
|
Hsc_gene_12867.t1
|
Hsc_gene_12862.t1;Hsc_gene_12865.t1;Hsc_gene_12866.t1;Hsc_gene_12867.t1
|
— |
Q5XIW8.1 U4/U6.U5 tri-snRNP-associated protein 1 [Rattus norvegicus]
|
KAI1728117.1 SART-1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0046540
|
GO:0008150_0.939|GO:0005575_0.938|GO:0110165_0.933|GO:0005622_0.913|GO:0043226_0.867|GO:0043229_0.841|GO:0016020_0.837|GO:0043227_0.779|GO:0043231_0.747|GO:0009987_0.746|GO:0005634_0.712|GO:0032502_0.649|GO:0048856_0.649|GO:0008152_0.644|GO:0032501_0.644|GO:0044238_0.636|GO:0044237_0.632|GO:0007275_0.626|GO:0009058_0.621|GO:0043170_0.620|GO:0006139_0.617|GO:0003674_0.615|GO:0044249_0.610|GO:0009059_0.609|GO:0010467_0.608|GO:0032991_0.600|GO:0005488_0.598|GO:0090304_0.596|GO:0034654_0.595|GO:0016070_0.584|GO:0141187_0.583|GO:0005737_0.575|GO:0031974_0.575|GO:0031981_0.575|GO:0032774_0.575|GO:0043233_0.575|GO:0070013_0.575|GO:0065007_0.559|GO:0006396_0.547|GO:0050789_0.541|GO:0016071_0.536|GO:0006397_0.533|GO:0000375_0.529|GO:0000377_0.529|GO:0000398_0.529|GO:0008380_0.529|GO:0071840_0.525|GO:0050794_0.521|GO:0016043_0.507|GO:0097159_0.506
|
IPR005011+47-915_135-871+|IPR045347+72-95+
|
— |
PF03343+135-871+SART-1_family|PF19252+72-95+HIND_motif
|
— |
PTHR14152+47-915+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-920
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
103845.130
|
5.438
|
-16.500
|
42.609
|
6.848
|
61.196
|
38.804
|
20.978
|
21.630
|
44.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
3666.894
|
3701.318
|
3334.209
|
3414.641
|
3956.099
|
3689.041
|
2978.978
|
2318.742
|
6811.065
|
2161.975
|
4154.442
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.381
|
-0.254
|
0.144
|
0.181
|
— |
-0.297
|
-0.777
|
0.506
|
— | — | — | — | — |
No JSON data available for plots.