Hg_chrom1_TN10mRNA_1815
Organism: Heterodera glycines Gene Locus: chr1:15628562-15630284 Feature type: polypeptideProtein Sequence
Length: 363
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.929 | 0.769 | 0.651 | 0.855 | 0.918 | 1.413 | 2.197 | 1.653 | 0.735 | 0.372 | 0.918 | 1.458 | 0.612 | 2.914 | 1.012 | 0.512 | 0.497 | 0.626 | 0.848 | 0.324 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1741
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.883
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
PKPS,PGKKGPRGPPGPAGPDGKPGDAGAPGQPGAPGELKPGPVKVGPPGPPG
|
13-33
|
0.985
|
23-104
|
0.950
|
— | — |
0.005
|
— | — |
0.047
|
0.078
|
0.006
|
0.113
|
0.522
|
0.263
|
0.315
|
0.005
|
0.696
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006381
|
1.000
|
1.000
|
Hsc_gene_12870.t1
|
Hsc_gene_12870.t1
|
— |
P20631.1 Cuticle collagen 13 [Caenorhabditis elegans]
|
AFG25458.1 col-180-1 [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0005575_0.948|GO:0008150_0.946|GO:0110165_0.938|GO:0032501_0.861|GO:0032502_0.849|GO:0048856_0.849|GO:0007275_0.833|GO:0071944_0.745|GO:0030312_0.676|GO:0042303_0.675|GO:0018996_0.670|GO:0040002_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0031012_0.626|GO:0062023_0.617|GO:0060102_0.540
|
IPR002486+16-68_19-68+|IPR008160+146-202_211-269+|IPR050632+21-274+
|
SM01088+16-68+
|
PF01391+146-202_211-269+Collagen_triple_helix_repeat_(20_copies)|PF01484+19-68+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+21-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;56-363
|
1.000
|
5-55
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
37435.040
|
8.749
|
13.000
|
23.416
|
7.713
|
38.843
|
61.157
|
14.325
|
9.091
|
61.708
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
24684.813
|
155.702
|
54.106
|
36096.722
|
80223.466
|
29476.599
|
53165.886
|
8364.112
|
80.037
|
30109.807
|
17239.906
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.752
|
7.721
|
9.489
|
1.120
|
-1.429
|
0.858
|
-1.944
|
2.817
|
-8.710
|
8.992
|
— | — | — |
No JSON data available for plots.